PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 866801
Common NameARALYDRAFT_666245
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 400aa    MW: 45001.8 Da    PI: 10.1048
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
866801genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.5e-08314363147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
           866801 314 RRPFTVSEVEALVQAVERLGTGRWRDVKCHAFdhaKHRTYVDLKDKWKTL 363
                      679************************999999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.182309368IPR017930Myb domain
SuperFamilySSF466891.27E-15311398IPR009057Homeodomain-like
SMARTSM007171.8E-6313366IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10314364IPR009057Homeodomain-like
CDDcd116609.48E-17315365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MVDCGVDAYQ LPVVPRACRS PRGRMQRLMK KQRSDFEVLA QVAEKLSGER KHRVAIGSLA  60
HKTKETKNDF IFNNFLETME VEVKPQLGPE KPSQVLLSKD WLALGPSASN SPISQEEKFD  120
SHSKIDGKRK MCHLKEGGSC SSQESQNMYP LKKRKLFYQN HPSESHDAPC TVKFGIKSLQ  180
ISELLVDIPE SATVGSLKLA VLDAVTRILK DGLNIGVLLR GKTIVDDSKM LLQIGIPHDD  240
DDDQNLSSLG FMLEPQKSET TTITTLNNVY PRTRLRQNRV LGSVDSTEVM AAKSVVPVRM  300
KPASQPEIVQ RRIRRPFTVS EVEALVQAVE RLGTGRWRDV KCHAFDHAKH RTYVDLKDKW  360
KTLVHTAKIS ARQRRGEPVP QDLLDRVLAA HAFWSDRTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-48297395198Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMap866801
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026861e-104CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876225.10.0telomere repeat-binding protein 6
SwissprotQ9M3470.0TRP6_ARATH; Telomere repeat-binding protein 6
TrEMBLD7LUM40.0D7LUM4_ARALL; Predicted protein
STRINGAl_scaffold_0005_22800.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15921911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53790.10.0TRF-like 4