PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

858789

Common Name

ARALYDRAFT_658233

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HSF

Protein Properties

Length: 296aa MW: 34979.8 Da PI: 7.9215

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
858789	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	66.5	6e-21	17	103	2	96
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F++ +y++++d + +++isws++g+sf+++++eef ++ L++ F+ +n++SF Ln gF+k+++ + weF++++F +g+ +l+++ 858789 17 FITTTYDMVDDLSSDSIISWSQSGKSFIIWNPEEFYNNFLQRfCFQGDNINSFFSYLNSHGFRKIDSGN---------WEFANDNFVRGQPHLINN 103 9*************************************9977*****************9988.........***********99876 PP
2	HSF_DNA-bind	59.5	8.8e-19	152	243	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F +klye+++d++ + +isws++g+sf++++++ef k++L ++ + ++ F +L+ + Fkk++ ++ weF++++F +g+ +l+e i 858789 152 FPTKLYEMVDDPSSDAIISWSQSGRSFIIWNPKEFCKDLLRRFSNTLHIPLFFHKLQRFSFKKIDPKK---------WEFANDNFVRGQCHLVEIII 239 899***********************************************************9998.........************999887 PP XXXX CS HSF_DNA-bind 99 rkks 102 +++ 858789 240 SNEK 243 6655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.4E-25	8	101	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	5.03E-23	13	103	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.8E-37	13	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-7	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.2E-19	17	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-7	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.4E-25	143	235	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.1E-27	148	241	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	9.25E-23	149	238	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.0E-18	152	237	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MLNLNENEGS STSISNFITT TYDMVDDLSS DSIISWSQSG KSFIIWNPEE FYNNFLQRFC 60 FQGDNINSFF SYLNSHGFRK IDSGNWEFAN DNFVRGQPHL INNTISCVIE GRVLYDQSMD 120 MFKVRKLFER QVKEVEDQLP PHNSYPTSKR PFPTKLYEMV DDPSSDAIIS WSQSGRSFII 180 WNPKEFCKDL LRRFSNTLHI PLFFHKLQRF SFKKIDPKKW EFANDNFVRG QCHLVEIIIS 240 NEKEKIDQLL KRYDRQKKLG EARELFKLQI EEMKKTKEVK EQEVRLQHHI GLCKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	858789

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493684	0.0	AB493684.1 Arabidopsis thaliana At4g18870 mRNA for hypothetical protein, partial cds, clone: RAAt4g18870.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002870020.1	0.0	heat stress transcription factor C-1
TrEMBL	D7M9E4	0.0	D7M9E4_ARALL; Predicted protein
STRING	Al_scaffold_0007_2288	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20171	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18870.1	1e-131	HSF family protein

Link Out ? help Back to Top
Phytozome	858789
Entrez Gene	9306091