PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678468857
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Dof
Protein Properties Length: 280aa    MW: 30574.5 Da    PI: 9.6441
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678468857genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.19.6e-3956116262
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                +e+al+cprC+stntkfCy+nnyslsqPr+fCk+CrryWt GGalrnvPvGgg+r+nk+ss
  678468857  56 PESALRCPRCESTNTKFCYFNNYSLSQPRHFCKSCRRYWTIGGALRNVPVGGGCRRNKRSS 116
                57889*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3240110IPR003851Zinc finger, Dof-type
PfamPF027011.5E-3258114IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.35760114IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106298IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAFSSLPTYL DASNWNQGVE SSSGSLLLAP KVHGGGAAAR PRSMAERARM ANLPMPESAL  60
RCPRCESTNT KFCYFNNYSL SQPRHFCKSC RRYWTIGGAL RNVPVGGGCR RNKRSSKSSK  120
PKPATSSNAT STVLGHHGLA PQLPATSSLP PLPQLPENYF DRGAVEPLFS SGLKSWRFNQ  180
TRQLPFLCGS DSSSSSPEGI FQFHGSEAPV FGGGLLPNLS GPLFNHLEPV KMEDTSLPKQ  240
LMDEKLMRNY HWSNAASSWN QFQILSSSSA GNPMYGMHED
Cis-element ? help Back to Top
SourceLink
PlantRegMap678468857
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549341.11e-65LOW QUALITY PROTEIN: dof zinc finger protein DOF5.1-like
TrEMBLA0A4D8YJT32e-62A0A4D8YJT3_SALSN; Uncharacterized protein
STRINGEOY075473e-59(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.15e-42DNA binding with one finger 2.4