PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678468388 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | CO-like | ||||||||
Protein Properties | Length: 346aa MW: 37605.6 Da PI: 8.4848 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21 | 6.8e-07 | 32 | 71 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htvv 40 + C+ ++ +++lfC ++ ++C +C + H + H++v 678468388 32 KLCSCCDAAPAILFCVSDAAFFCVSCDSRLHVNkplHERV 71 57*****************************878888865 PP | |||||||
2 | zf-B_box | 28.3 | 3.8e-09 | 70 | 116 | 2 | 42 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ ++ l C+ ++ lC C + +H+ H++v+l 678468388 70 RVWICDVCERSPAVLACKADSAALCSACDSDIHSAnplasrHERVSL 116 5689*****************************66899999999875 PP | |||||||
3 | CCT | 69.1 | 1.1e-23 | 255 | 298 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae RpRvKGrF+k++ 678468388 255 REARVLRYKEKRKRRKFEKTIRYASRKAYAEARPRVKGRFAKRP 298 9****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 8.916 | 29 | 73 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 0.15 | 29 | 67 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.82E-5 | 33 | 73 | No hit | No description |
PROSITE profile | PS50119 | 10.182 | 69 | 116 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.6E-13 | 69 | 116 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.7E-7 | 70 | 116 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.60E-8 | 72 | 116 | No hit | No description |
PROSITE profile | PS51017 | 16.569 | 255 | 297 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.1E-17 | 255 | 297 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MGIFSVDHGA AAAAAAAIRS RFFPGGHNPG RKLCSCCDAA PAILFCVSDA AFFCVSCDSR 60 LHVNKPLHER VWICDVCERS PAVLACKADS AALCSACDSD IHSANPLASR HERVSLSAFY 120 HTAEKMMGAF NAPPQPVELM LLDSDSPQNF LDLDYYSISS HPGVAPCRPI PEPPPATARL 180 LQDFSPENGI KLEFPPSHFN SYASSNNNPS LSYTVSSPSI DYGVVPDGSS MSELSHPFPR 240 SICIDVPKNQ GDVDREARVL RYKEKRKRRK FEKTIRYASR KAYAEARPRV KGRFAKRPPP 300 PTTRPSAASS SPNRIPDPDT ASFRRSSTDF GASDLGPVPG RPIVIS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 264 | 269 | KRKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678468388 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069877.1 | 2e-80 | zinc finger protein CONSTANS-LIKE 5-like | ||||
TrEMBL | A0A2G9HFV0 | 6e-90 | A0A2G9HFV0_9LAMI; GATA-4/5/6 transcription factor | ||||
STRING | Migut.K00262.1.p | 2e-67 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24790.1 | 1e-32 | CONSTANS-like 3 |