PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678468222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | RAV | ||||||||
Protein Properties | Length: 331aa MW: 37906.7 Da PI: 9.4754 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.3 | 1.8e-13 | 45 | 93 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g 678468222 45 SRFKGVVPQP-NGRWGAQIYEK-----HRRIWLGTFNDEDEAAKAYDTAAQRFRG 93 689***9788.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 102.2 | 2.8e-32 | 163 | 264 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++ e++l+ 678468222 163 FEKAVTPSDVGKLNRLVIPKQYAEKHfplqignNGNTSKGILLNFEDMTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKDLRAGDVVSFRRSTGPERQLY 262 89*******************************88999****************************************************8766666666 PP EE CS B3 94 vk 95 + 678468222 263 ID 264 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.58E-24 | 45 | 100 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-17 | 45 | 101 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.7E-8 | 45 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-27 | 46 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.783 | 46 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-19 | 46 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-39 | 157 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-30 | 162 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.72E-29 | 162 | 254 | No hit | No description |
PROSITE profile | PS50863 | 14.621 | 163 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-28 | 163 | 264 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.5E-24 | 163 | 269 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MQGTYGYETS SIESPSVAPA SVLMSEKSPP RKTPEDSDTR KLPSSRFKGV VPQPNGRWGA 60 QIYEKHRRIW LGTFNDEDEA AKAYDTAAQR FRGRDAVTNF KPLAADETEM VFLNCHSKDE 120 IVDMLRKHTY HDELQQSRKN YGLKYVSHGH GDPSAEECHE ELFEKAVTPS DVGKLNRLVI 180 PKQYAEKHFP LQIGNNGNTS KGILLNFEDM TGKVWRFRYS YWNSSQSYVL TKGWSRFVKE 240 KDLRAGDVVS FRRSTGPERQ LYIDWKPGRN VENNRRIQPV QMMRLFGVNI FEDQRRGGGD 300 GGAGDDDAKR IREMELLGLV CSKKHRIINV L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-54 | 160 | 266 | 11 | 115 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678468222 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077234.1 | 1e-154 | AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9C6M5 | 1e-127 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A2G9I1N7 | 1e-153 | A0A2G9I1N7_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_010157m | 1e-149 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-129 | RAV family protein |