PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678468174 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | CO-like | ||||||||
Protein Properties | Length: 342aa MW: 37287.4 Da PI: 5.9637 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.1 | 7.6e-08 | 10 | 50 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++ C+ ++e +++ fC+ ++ +lC+ C + H+ H 678468174 10 AKLCNFCKEVPASVFCRADSAFLCAPCDDRVHSAnklasrH 50 578**************************999655555556 PP | |||||||
2 | zf-B_box | 28.1 | 4.2e-09 | 54 | 98 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++ + C+ + lC++C +H+ H+++p+ 678468174 54 GICEVCEQAPAAFTCKADAAALCASCDRDIHSAnslasrHERIPV 98 68*****************************66889999998875 PP | |||||||
3 | CCT | 69 | 1.3e-23 | 279 | 322 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ 678468174 279 REARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 322 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.424 | 8 | 55 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.5E-13 | 8 | 55 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.5E-6 | 11 | 52 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.31E-8 | 12 | 53 | No hit | No description |
PROSITE profile | PS50119 | 10.651 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.2E-7 | 54 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.92E-7 | 55 | 98 | No hit | No description |
SMART | SM00336 | 1.4E-9 | 56 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.5E-17 | 279 | 321 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.797 | 279 | 321 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MVGESRSRAA KLCNFCKEVP ASVFCRADSA FLCAPCDDRV HSANKLASRH ARVGICEVCE 60 QAPAAFTCKA DAAALCASCD RDIHSANSLA SRHERIPVIP FYDAASASKS TGPPAAGEFS 120 EEEAEAASWL LPDPDCKAAV EDLNSPGYTS AEYLFNEMDN HYLDLDLIPG DQKPGHHADG 180 VDEKQVYSDG VVPVQHKSDL NSSVQYPGPA VNGYPSYDVE YPSPKPLIYS FSSQAISHSV 240 SSSSIDVGVV PDQGDVSTTH WKNDVGSDGA PTPVSGVDRE ARVLRYREKR KNRRFEKTIR 300 YASRKAYAET RPRIKGRFAK RTELDVDWLV HQDPSYGVVP SS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678468174 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078988.1 | 1e-139 | zinc finger protein CONSTANS-LIKE 4-like | ||||
TrEMBL | A0A2G9H9E3 | 1e-138 | A0A2G9H9E3_9LAMI; GATA-4/5/6 transcription factor | ||||
STRING | XP_009590370.1 | 1e-129 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009618115.1 | 1e-129 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24790.1 | 8e-82 | CONSTANS-like 3 |