PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678467508 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 39187.4 Da PI: 8.449 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.1 | 2.1e-50 | 50 | 174 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lp+GfrFhPtdeelv +yL+++++g+++e+ vi+e+d+y+++Pw+Lp +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v + ++ 678467508 50 LPAGFRFHPTDEELVEHYLCRRCAGQRIEA-PVIAEIDLYRFDPWELPGFSLYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGK--PKTL 146 799**************************9.89***************54445789************************************98..778* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+apkg kt+W+mheyrl 678467508 147 GIKKALVFYAGKAPKGFKTNWIMHEYRL 174 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-61 | 42 | 200 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.585 | 50 | 200 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-27 | 51 | 174 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MASPCLEKSS FWWQAFSGGR RRSCRKCVVS CFCRVLGLGR RMKGASQLDL PAGFRFHPTD 60 EELVEHYLCR RCAGQRIEAP VIAEIDLYRF DPWELPGFSL YGEKEWYFFS PRDRKYPNGS 120 RPNRAAGTGY WKATGADKPV GKPKTLGIKK ALVFYAGKAP KGFKTNWIMH EYRLANVDRS 180 AGKKTNLRLD DWVLCRIYNK KGTLEIYNNV NQREVHFSDS EEQKPNLDLY HQQYNGAIKP 240 SPMLQAPQPF LTRPKDESLH FETSDSLPKL HTDSSSSEQA PCPEFKEVQS EPKWSEMEST 300 LDLQVNYLDG FQDEIFGSQM GYSDQLPLFQ DMFAYVHKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-82 | 36 | 205 | 1 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 42 | RRRSCRKCVVSCFCRVLGLGRRMK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678467508 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099683.1 | 1e-163 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-119 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2G9HDB1 | 1e-165 | A0A2G9HDB1_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00825.1.p | 1e-139 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-121 | NAC family protein |