PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678467421
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 570aa    MW: 62705.3 Da    PI: 5.6954
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678467421genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-07265285526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f + GtC  Gd+C +aHg
  678467421 265 PCPEFKK-GTCVKGDNCEYAHG 285
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.58E-1447150IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-876142IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.8E-1476158IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.7976100IPR002110Ankyrin repeat
SMARTSM002480.001176106IPR002110Ankyrin repeat
PROSITE profilePS5029715.40676146IPR020683Ankyrin repeat-containing domain
CDDcd002041.80E-1278156No hitNo description
PROSITE profilePS5008810.659111146IPR002110Ankyrin repeat
SMARTSM002480.0093111143IPR002110Ankyrin repeat
SMARTSM003563.7E-5260286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.831265287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-5265286IPR000571Zinc finger, CCCH-type
SMARTSM0035625295318IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.15295319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MCGGGKSESN GYNSEMEAEF QVEQGGEARK YCTVLLELAA FDDLSGFLHE IEMGSSLDEM  60
GFWYCRRLGS NRMGFEERTP LMVASLYGSL SILKYLVESG KVDVNRASGS DGATALHCAA  120
AGGSWSSLEV VNILINAAGD VDALDLKGKR AGDLMAPCVK RSSQLLSRKK LEMLLNGVAG  180
DCELDEEEEA EEEIAIQKKK EYPFDISLPD INDGIYGTDE FRMYSFKVKP CSRAYSHDWT  240
ECPFVHPGEN ARRRDLRKYH YSCVPCPEFK KGTCVKGDNC EYAHGVFESW LHPAQYRTRL  300
CKDETGCSRK VCFFAHKPEE LRQSYASTGL DLSQLPLGSP GSSPIVGGSL WQSKINTTPP  360
ALQLPGSRLK ATLSARDADL DMKVLGFEEM GNISSPYSRM GAGGELKQGN LDELFGSYDQ  420
SLISQMQGLS PKFSSNSSPQ VQSPAYRQNM NHLRSSFPSS ISSAQPRNYA FDSSSAMAAA  480
ILNSRSSALS KRSQSFIDPG RYSLSCSANS PVHSIPSEWG SPDGKLDWRF NGDDATKLKK  540
SPSFGIRSEN GFHARNTMLT PNMDDPEVYW
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678467421
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076700.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE61e-174C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2G9I5810.0A0A2G9I581_9LAMI; CCCH-type Zn-finger protein
STRINGPGSC0003DMT4000698880.0(Solanum tuberosum)
STRINGXP_004307656.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-160C3H family protein