PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678458613

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NF-YB

Protein Properties

Length: 417aa MW: 45469.8 Da PI: 7.3727

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678458613	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	179.6	2.7e-56	73	168	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqdrflPianv+rimkk lPanakiskdaketvqecvsefisfvt+easdkcqrekrkt+ngddllwa+ tlGf++yveplkvyl kyre+egek 678458613 73 REQDRFLPIANVGRIMKKGLPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTVNGDDLLWAMMTLGFDEYVEPLKVYLGKYREMEGEK 168 89*******************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-50	69	173	IPR009072	Histone-fold
SuperFamily	SSF47113	1.43E-38	75	173	IPR009072	Histone-fold
Pfam	PF00808	8.1E-27	78	142	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.2E-19	106	124	No hit	No description
PROSITE pattern	PS00685	0	109	125	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.2E-19	125	143	No hit	No description
PRINTS	PR00615	3.2E-19	144	162	No hit	No description
Pfam	PF05498	3.0E-11	350	392	IPR008801	Rapid ALkalinization Factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MHIFLVAISS VCQREGEVVK VIPNPLLRCD LIQKNQRSAV GVKKNLAAFA CGEKMVDSEN 60 DSGGYGNSSA GNREQDRFLP IANVGRIMKK GLPANAKISK DAKETVQECV SEFISFVTGE 120 ASDKCQREKR KTVNGDDLLW AMMTLGFDEY VEPLKVYLGK YREMEGEKIS SGGSEEGGAA 180 VIGAGIYGGN VMDYHEPGHI YGVPGASDVL QHVHGAGATH GLVGKRKRTD APTWGLLARD 240 TIGGIVPCPI SKISPSLVTC SAAPRAYSSN CRGARSNVMQ SWLMMVTSQS FQLLLRSLSN 300 NLLCWEHESC SDRYILPNCV PFIQCCIVFT VGSPCSRPFP WCLIGDDSDA IMPTDVSHRM 360 LAQSGDYIGY GALGRDSVPC SRTGRSYYNG DSHQPQSLQL GIYQDHVLRS KQQLIDW

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MHIFLVAISS VCQREGEVVK VIPNPLLRCD LIQKNQRSAV GVKKNLAAFA CGEKMVDSEN  60
DSGGYGNSSA GNREQDRFLP IANVGRIMKK GLPANAKISK DAKETVQECV SEFISFVTGE  120
ASDKCQREKR KTVNGDDLLW AMMTLGFDEY VEPLKVYLGK YREMEGEKIS SGGSEEGGAA  180
VIGAGIYGGN VMDYHEPGHI YGVPGASDVL QHVHGAGATH GLVGKRKRTD APTWGLLARD  240
TIGGIVPCPI SKISPSLVTC SAAPRAYSSN CRGARSNVMQ SWLMMVTSQS FQLLLRSLSN  300
NLLCWEHESC SDRYILPNCV PFIQCCIVFT VGSPCSRPFP WCLIGDDSDA IMPTDVSHRM  360
LAQSGDYIGY GALGRDSVPC SRTGRSYYNG DSHQPQSLQL GIYQDHVLRS KQQLIDW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	7e-44	73	163	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678458613

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-62	nuclear factor Y, subunit B3