PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678456285 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 221aa MW: 25093.4 Da PI: 5.1592 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.1 | 2.1e-20 | 72 | 124 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++eqle Le++F+++ +++ +++ +LAk+lg++ rq+ +WFqNrRa++k 678456285 72 KKRLSTEQLESLENCFQEEVKLDPDRKMKLAKELGMQPRQIAIWFQNRRARWK 124 45699***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.4 | 8e-38 | 71 | 161 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rls+eq+++LE++F+ee kL+p+rK++la+eLg+qprq+a+WFqnrRAR+k+kqlE+ y+aLk++++a++ e+++L++ev +Lr+ lk 678456285 71 KKKRLSTEQLESLENCFQEEVKLDPDRKMKLAKELGMQPRQIAIWFQNRRARWKAKQLENLYDALKQELEAVTGEKQQLQQEVMALRALLK 161 9**************************************************************************************8877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.07E-19 | 58 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.471 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-17 | 68 | 130 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.39E-17 | 71 | 127 | No hit | No description |
Pfam | PF00046 | 1.6E-17 | 72 | 124 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-21 | 73 | 133 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 97 | 106 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 101 | 124 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 106 | 122 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MASMDWNNEG YRLASLGSRP ETSFGFLCNY NYDHPFPGLE MKPQSLSATQ ILPSLTGKSV 60 GFSNTYGQDL KKKRLSTEQL ESLENCFQEE VKLDPDRKMK LAKELGMQPR QIAIWFQNRR 120 ARWKAKQLEN LYDALKQELE AVTGEKQQLQ QEVMALRALL KDQVGKKTQL SPGEETVESR 180 SIVNPEGDAP PLTNDGNYIM NVDDYSNPAA IMTPYNWPAL L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 126 | RRARWKAKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678456285 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094442.1 | 5e-84 | putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | S8CB32 | 2e-86 | S8CB32_9LAMI; Uncharacterized protein | ||||
STRING | Migut.J00491.1.p | 2e-75 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 7e-50 | homeobox 51 |