PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678454168
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HB-other
Protein Properties Length: 281aa    MW: 32012.4 Da    PI: 6.3507
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678454168genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.3e-092282622155
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                k +yp++++++ LA+ +gL+++q+++WF N+R ++
  678454168 228 KWPYPTEADKAFLAETTGLDQKQISNWFINQRKRH 262
                669*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-205094IPR005540KNOX1
PfamPF037901.1E-195291IPR005540KNOX1
SMARTSM012561.5E-1797169IPR005541KNOX2
PfamPF037911.7E-11133168IPR005541KNOX2
PROSITE profilePS512138.608182202IPR005539ELK domain
SMARTSM011880.0059182203IPR005539ELK domain
PROSITE profilePS5007111.467202265IPR001356Homeobox domain
SuperFamilySSF466891.07E-17204272IPR009057Homeodomain-like
SMARTSM003898.7E-12204269IPR001356Homeobox domain
CDDcd000861.14E-12205266No hitNo description
Gene3DG3DSA:1.10.10.602.9E-26208265IPR009057Homeodomain-like
PfamPF059204.1E-17222261IPR008422Homeobox KN domain
PROSITE patternPS000270240263IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEGIYGMISG NGESYYSDDK SCFLFPEDLQ VPAAEAAQIQ YVSIDADDHQ MIKAKIASHP  60
RYTKLLHAHI DCQKVGAPVE MACLLEEVQG ESVNFASGIH LGTDPELDEF MVRIILRELY  120
KNVKFHHFFS MKEAYCSMLV ELKTGLSQPL DEAASFLNKI ETQLRSLCEA SSSEELKSND  180
EEVKQSLRRR YGGDIGSLKQ AFSRKKKGGK LPKEATETLL LWWNLHRKWP YPTEADKAFL  240
AETTGLDQKQ ISNWFINQRK RHWKPSDLMQ LAAGDFPGHF F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187206RRRYGGDIGSLKQAFSRKKK
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678454168
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071110.12e-79homeobox protein knotted-1-like 6 isoform X1
SwissprotQ84JS66e-74KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLV5K9532e-75V5K953_9ROSI; KNOX transcription factor 2
STRINGEOY005441e-75(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-76KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]