PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678454005
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 498aa    MW: 56151.3 Da    PI: 6.9572
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678454005genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.71.2e-2181181187
   trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkm...............rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                rW++ e+l L+e+r+++++++r+ + +k+plW+e  ++                +e g++rs k+C+ek+enl k+ykk+keg+++r  ++ +++++f+q
  678454005  81 RWPRLETLSLLEVRTRLDSKFREaNHQKAPLWDEECARGsshhdyyhmklgimsEEYGYQRSGKKCREKFENLYKYYKKTKEGKSRR--QDGKHYRFFRQ 178
                8*********************93569*****8766666699*******************************************98..55667****** PP

   trihelix  85 lea 87 
                lea
  678454005 179 LEA 181
                *85 PP
2trihelix50.26.5e-16384454271
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkry.kkikegekkr 71 
                Wt++ev +Li++r+ ++   ++g ++++lWee+s+km + g++rs  +Ckekw++ln +  k +k++++++
  678454005 384 WTEHEVSKLIQLRSGIKFGGESGISEEALWEEISRKMVSFGYQRSGFMCKEKWDSLNDYGsKGCKKRKENE 454
                ********************************************************987424455555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.26374154IPR017877Myb-like domain
CDDcd122031.67E-1381161No hitNo description
PfamPF138379.4E-1281182No hitNo description
PfamPF138371.1E-10383448No hitNo description
Gene3DG3DSA:1.10.10.606.1E-4384439IPR009057Homeodomain-like
PROSITE profilePS500907.178384440IPR017877Myb-like domain
CDDcd122032.99E-15384442No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MEHDYSHMAD PRQFITGGRS FFPPEFMVAP HLHPHLPYAN VLAYRHDPSG ITGTALAAGV  60
GGGGGGMEGD VGGGGDAGTG RWPRLETLSL LEVRTRLDSK FREANHQKAP LWDEECARGS  120
SHHDYYHMKL GIMSEEYGYQ RSGKKCREKF ENLYKYYKKT KEGKSRRQDG KHYRFFRQLE  180
ALYGETSKSA SEADASHFHS GGNFRQAFSN NEVGLAMNQG TPFSTPNNNT SNNLVSPSNC  240
CDSADISSGE SDVREDEEDE EEEEAAASGD QKGKKQRRGL KGKIMGFINQ QMTKLMEKQE  300
AWMQKVMNTI EVKEQERILR EEKWRKQDAA RIEREHSFWA GEKAWIEARD NALMEAFHQA  360
AGKQNKYMDF MPGKANGNFN TVMWTEHEVS KLIQLRSGIK FGGESGISEE ALWEEISRKM  420
VSFGYQRSGF MCKEKWDSLN DYGSKGCKKR KENENPKTGS CYENTVGSLY CDTSEQGGAG  480
LPMSIGNHSN HHHWGSGF
Cis-element ? help Back to Top
SourceLink
PlantRegMap678454005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022864074.11e-122trihelix transcription factor PTL-like
TrEMBLA0A2G9G8M21e-119A0A2G9G8M2_9LAMI; Transcription factor GT-2
STRINGVIT_08s0007g03820.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30632451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.17e-41Trihelix family protein