PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678443807
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 505aa    MW: 55581.3 Da    PI: 6.8716
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678443807genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.6e-22106206198
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                f k+lt+sd+++ g l++p+ +ae++          ++  +t++ +d ++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+vvF    + +++el
  678443807 106 FSKTLTQSDANNGGGLSVPRCCAESIfpklgtaV--EPPVQTIVAKDIHSVTWKFRHIYRGTPRRHLLTTGWNTFVNKKRLVAGDSVVFV---KlENGEL 200
                88***************************99643..444459************************************************...5589999 PP

                EEEEE- CS
         B3  93 vvkvfr 98 
                ++++ r
  678443807 201 YIGIKR 206
                999977 PP
2Auxin_resp99.54.7e-33251332383
  Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 + a+ +++Fe+vY+Pra+t+eFvv+++ v+++l v+++ GmR+kmafeteds ++++ +Gtv++ +  dp++Wp+S+Wr+L+
   678443807 251 RLATDRQPFEIVYYPRAGTPEFVVSAATVRASLFVQWCSGMRIKMAFETEDSLRTSWfMGTVSSPRIHDPIHWPDSPWRLLQ 332
                 568899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-33100208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-29100203IPR015300DNA-binding pseudobarrel domain
CDDcd100174.67E-21105206No hitNo description
PROSITE profilePS5086312.478106208IPR003340B3 DNA binding domain
SMARTSM010193.2E-20106208IPR003340B3 DNA binding domain
PfamPF023624.2E-20106207IPR003340B3 DNA binding domain
PfamPF065073.4E-28251332IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MNPEVWAACA GGVSQIPPEN SKVYYFPQGH AEHALGKVDF SGFPRVRPLV PCTVSSIRYL  60
ADTENDEVYA EIGLIPFGGS ELDFAVDRNG VLAFDGNGEN KKTESFSKTL TQSDANNGGG  120
LSVPRCCAES IFPKLGTAVE PPVQTIVAKD IHSVTWKFRH IYRGTPRRHL LTTGWNTFVN  180
KKRLVAGDSV VFVKLENGEL YIGIKRSKKE IPFLNPASYK AALPDFLRDI GTTVKRGHVR  240
RSAESVLESV RLATDRQPFE IVYYPRAGTP EFVVSAATVR ASLFVQWCSG MRIKMAFETE  300
DSLRTSWFMG TVSSPRIHDP IHWPDSPWRL LQVTWDEPDF LQNLNHVNPW AVELVIDPVI  360
PEIGHRPPVV KRPRLLDHSL EFPLHLPMLI GNPLSPSSPL CSFPDNIPAA GVQRHRNPHL  420
GLPPQVPIKC NDSPAAAEAE EVEEICRKKE ADPGAPAFVL FGQPILTAQQ MSCKEKATTN  480
TSSPATAAAA PSSSDGISDK PLEDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-76135351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678443807
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235544.11e-174PREDICTED: auxin response factor 16-like isoform X1
RefseqXP_019235545.11e-174PREDICTED: auxin response factor 16-like isoform X1
RefseqXP_019235546.11e-174PREDICTED: auxin response factor 18-like isoform X2
SwissprotQ93YR91e-146ARFP_ARATH; Auxin response factor 16
TrEMBLA0A2G9GV600.0A0A2G9GV60_9LAMI; Auxin response factor
STRINGXP_009602628.11e-171(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-142auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]