PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678436728
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 297aa    MW: 33067.8 Da    PI: 8.2528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678436728genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12127172555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h  +Er+RR+++ ++f +L +++P +     kK++K +iL  A+ Y+k+Lq
  678436728 127 HIVAERKRRQQLSQRFITLSTIVPGL-----KKMDKTSILGDAIAYLKQLQ 172
                8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.862122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16123183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.99E-12127176No hitNo description
Gene3DG3DSA:4.10.280.105.0E-16127184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-10127172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRTGEAPAGL GMDGWMLMDD HHPSDLLMDL DDEAAAATEL ESCFPSNQIN VSSTDSPSQG  60
SPTPISKTRP QTKRHNNSFA THTTHPPVIL NFGNPVETAA VFQSQGSQMK SKRQPVRVRP  120
PSQTYDHIVA ERKRRQQLSQ RFITLSTIVP GLKKMDKTSI LGDAIAYLKQ LQEKVKILEE  180
QASKKAKVSV VLVNKPQIMV DDKDSLDNKR SSEEQLLPEI EVRAYSNHIF VRVHCEKQKK  240
GVLVNLLSKM ENLNLSVVSA NVTPFGDLSL DITVVAEMEK EFDLTAKEVV RTLRSAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678436728
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073652.12e-98transcription factor bHLH18-like
TrEMBLA0A2G9I4F14e-94A0A2G9I4F1_9LAMI; Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1
STRINGAquca_010_00012.16e-65(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-45bHLH family protein