PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678423803
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 463aa    MW: 50999.8 Da    PI: 7.4668
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678423803genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-053658123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C+k F r  nL+ H r H
  678423803 36 FVCEVCNKGFQREQNLQLHRRGH 58
               89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-63558IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-63558No hitNo description
PROSITE profilePS5015711.0943658IPR007087Zinc finger, C2H2
SMARTSM003550.00413658IPR015880Zinc finger, C2H2-like
PfamPF121712.9E-53658IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
SMARTSM0035514081111IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.7E-4104136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-6111135No hitNo description
SMARTSM00355140116136IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVSNLCPFIF FVSIVADPNA EVIALSPKTL MATNRFVCEV CNKGFQREQN LQLHRRGHNL  60
PWKLKQKDDG GSKELIRKKV YLCPEPTCVH HDPTRALGDL TGIKKHYSRK HGEKKHRCEK  120
CSKRYAVHSD WKAHSKACGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARNLNHAHL  180
DDGNGVDGAG ASHHHLHLLG GLMTAGIQDQ NLSFSSNGFF RYAGGTHLDN LIGSASSRAP  240
PSLQKHSNEE SYQPSLHSLM LLQQQQPPQL HGNGSSSSLL NLGFFPGESG GAGEDPSIFT  300
YGTGSGSMHI PNPAYISAAS LLQRSAMYGS ITTENGGSSS QLELGSTEEH QDLKALLVFE  360
RNNNSSDVQE MANSIAHSST SVLVPGVYHH HHRHQEMDQY AAAGFHPHGM MELGEDGKLT  420
RDFLGVGRQW KRRKTTEDHL ENPISQTSQG GTFNSTDNPE PNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-32112173364Zinc finger protein JACKDAW
5b3h_F4e-32112173364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678423803
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547771.11e-116protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A4D8YP471e-120A0A4D8YP47_SALSN; Uncharacterized protein
STRINGGorai.008G168900.11e-109(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.15e-98indeterminate(ID)-domain 4