PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678422365 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | SBP | ||||||||
Protein Properties | Length: 217aa MW: 24208.7 Da PI: 9.4257 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 94.2 | 1.3e-29 | 86 | 155 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++dl++ak+yhrrhk+Ce+hsk+p v+v+g+e+r fh+lsefD++krsCr+rL++hn+rrr+ q 678422365 86 CCQVEGCRVDLKTAKDYHRRHKICEKHSKSPRVIVAGMERR-------FHDLSEFDDKKRSCRKRLNDHNARRRRVQ 155 6**************************************96.......7*************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.1E-24 | 80 | 141 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.564 | 84 | 154 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.43E-29 | 85 | 159 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.7E-22 | 87 | 153 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MESNSLSSSQ LEWRDLVLYS GTQKLMSLES NGLGTSSSSN CLLSADQLGC LSSSYKKQHV 60 IASSLTVSAS PMKRARVSGA HARNPCCQVE GCRVDLKTAK DYHRRHKICE KHSKSPRVIV 120 AGMERRFHDL SEFDDKKRSC RKRLNDHNAR RRRVQLETIQ LHPLRPSSSF YGSFEISCFQ 180 LIIIASSVDF LLCMGRCHEN AAAWVVEPGP ILAAPTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-20 | 87 | 153 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 152 | KKRSCRKRLNDHNARRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678422365 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022888133.1 | 7e-44 | squamosa promoter-binding-like protein 12 isoform X1 | ||||
Swissprot | A2YGR5 | 2e-33 | SPL12_ORYSI; Squamosa promoter-binding-like protein 12 | ||||
Swissprot | Q5Z818 | 2e-33 | SPL12_ORYSJ; Squamosa promoter-binding-like protein 12 | ||||
STRING | XP_010252163.1 | 1e-39 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13644 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 4e-31 | squamosa promoter binding protein-like 10 |
Publications ? help Back to Top | |||
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