PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678400283

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

WRKY

Protein Properties

Length: 240aa MW: 27100.4 Da PI: 9.0191

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678400283	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.3	1.3e-32	156	214	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H+h+ 678400283 156 LDDGYRWRKYGQKAVKNNRFPRSYYRCTHEGCSVKKQVQRLSKDEGVVVTTYEGMHTHP 214 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-33	141	215	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-29	148	215	IPR003657	WRKY domain
PROSITE profile	PS50811	29.826	151	216	IPR003657	WRKY domain
SMART	SM00774	2.4E-38	156	215	IPR003657	WRKY domain
Pfam	PF03106	9.6E-27	157	214	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MCDDRNENQG DRLVENIASA SIPKVGWSVQ PAGVESTGFL VWKRDHSTQE SSCWPSIRIS 60 PVNFNSISTT RLRAEAVHKT ICVLLRCATP HLVLNCIPPP FLAVASMDNY YFQASSSSSP 120 SQPPLEGSDG PPGRTQKKSG KKPRYAFQTR SQVDILDDGY RWRKYGQKAV KNNRFPRSYY 180 RCTHEGCSVK KQVQRLSKDE GVVVTTYEGM HTHPVQKSSD DFERILSQMQ IYNDHNTTLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	146	213	7	74	Probable WRKY transcription factor 4
2lex_A	2e-26	146	213	7	74	Probable WRKY transcription factor 4

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678400283

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2204	24	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	4e-52	WRKY DNA-binding protein 75