PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678397030
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 612aa    MW: 68130.2 Da    PI: 6.5093
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678397030genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.66.3e-25111212199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++         ++ +   ++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  + ++++l+
  678397030 111 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--NIVAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--KADNGNLW 206
                89****************************998666666..6************************************************..559999** PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r+
  678397030 207 VGIRRA 212
                ****97 PP
2Auxin_resp92.28.6e-31253336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa  a+t+++Fev + Pr+ t+eF+v+ + v +++++++++G Rfkm fetedss++++ +Gtv++v+ +d+++W nS Wr+L+
   678397030 253 AAYLAATSQPFEVEFFPRVNTPEFCVRSSAVFDSMRIQWCPGIRFKMPFETEDSSRISWfMGTVASVQVSDQLNWCNSLWRLLQ 336
                 677899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-36106217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-29108221IPR015300DNA-binding pseudobarrel domain
CDDcd100173.37E-21110211No hitNo description
PfamPF023623.6E-23111212IPR003340B3 DNA binding domain
PROSITE profilePS5086312.985111213IPR003340B3 DNA binding domain
SMARTSM010196.5E-21111213IPR003340B3 DNA binding domain
PfamPF065074.6E-25253336IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MREALDRSLD PELWHACAGG MVQIPPVNTE VFYFPQGHAE HTLAYVDFGN FPKIPPMILC  60
RVEDVKYLAD LETDEVYARI RLVPCGKNEV SLEDDRFVRP AFGSGSKPTS FAKTLTQSDA  120
NNGGGFSVPR YCAETIFPRL DYTADPPVQN IVAKDVHGET WKFRHIYRGT PRRHLLTTGW  180
STFVNQKKLV AGDSIVFMKA DNGNLWVGIR RAKKGRNNGA FEIRNSGCFS GFCSSFLKEN  240
TNKLVRPESV VQAAYLAATS QPFEVEFFPR VNTPEFCVRS SAVFDSMRIQ WCPGIRFKMP  300
FETEDSSRIS WFMGTVASVQ VSDQLNWCNS LWRLLQVTWD EPDLLQNVKC VNPWLVEIVS  360
RIPASSFTPR KKFRSPRDSD FSFDCQSPTP LGPKSPSFVL QDPISAGIQG ARHASTLDLC  420
SELQLGSQKP QQINDMKTAR FLLFGQPIFT EQQISGIDSV SSSECAKSFS STTDSGELTK  480
SLSDSEFTGK DEAGLDTSHC KCMVFIDSKK DITHSLDLSI IPSFEELYKK LEDIVGSDVQ  540
GNLLYHDATG VVKPVEDEPE PFSNFAKKAV RLIIHTKLDS NDASGRKLIT GLEMGARGLN  600
SSNHAGPLSI FA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-78935751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678397030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089288.10.0auxin response factor 18 isoform X2
SwissprotQ93YR90.0ARFP_ARATH; Auxin response factor 16
TrEMBLA0A191T8S30.0A0A191T8S3_SALMI; Auxin response factor
STRINGXP_009797612.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]