PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678395993

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SBP

Protein Properties

Length: 954aa MW: 106014 Da PI: 6.4575

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678395993	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.6	5.4e-41	144	221	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvCevhska+ +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ 678395993 144 VCQVEDCKADLSSAKDYHRRHKVCEVHSKASRALVGNVMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNKRRRKAHP 221 6**************************************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.9E-33	138	206	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.342	142	219	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.42E-38	143	223	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-29	145	218	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.97E-8	724	847	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.4E-8	737	852	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.71E-6	738	846	No hit	No description
PROSITE profile	PS50088	8.603	787	820	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	8.773	787	847	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence Send to blast
MELGGSLRRV YGSVVSEPLS GLGKSTEWDL NDWTWDGDFL RAAPLTAVPS DCRSRKFFPI 60 GFDPPVKDGC LNFLSHEHVL EDGMEKRDTE KRRRHIEINE EEDNGSLSLK LGGHVPPVVD 120 GDSGKWEKGR KKSKLSDSQS SRAVCQVEDC KADLSSAKDY HRRHKVCEVH SKASRALVGN 180 VMQRFCQQCS RFHALEEFDE GKRSCRRRLA GHNKRRRKAH PENVVATSAL TDEQGAKYLL 240 TSLLRILSNT QSNSSEQTND QELLSHLLRN LATVAGSAGT TSPSRLLPSS QNSHNMGTVH 300 KETSPDGRGF TLPFDSPHKS TLTDIVQVET ACETSPPCSS NGSAKVGRIK MSGIDLNSPY 360 DDTEDHMEDF VDNAPHDNPE NVSPCLVPWS FKEPQRSSPL QNSGNSVSLW SQSPSTSSGE 420 SRTHTDRIVF KLFGKNPSDL PLDLRKQILD WLSTSPTDIE SYIRPGCVIL TIYACMDKSN 480 WDELYYNLHS SLRKLLDESC DPFWRTEWIY TRVQHHASFA YNGMLISISG NWLDIHSFFQ 540 KTTGDYLIVA PSCNCTRLHC ALEGKYLLQE SCADTVKDDF LTNQEEQVQC ISFSCTIPNA 600 VGRGFIEVED CCLSSSFFPF IVAEKDVCTE IRGLENIIDA TNDATPDTSK CEARSQALNF 660 VHEIGWLLHK THLVFRSGKL SEDLDPFPFW RYKFLIEFAI DHEWPAVARK LLDVLMDGTV 720 VADGSMSVFA ALSDVGLLHR AVRKTSLPMV KFLLTYQPSG ISVQTGDAHE QVAGNRFLFK 780 PDAAGPGGLT PLHVAAGLDD SEAVIDSLTE NPASVGIEAW KSARDSAGLT PHDYARLRGH 840 HSYIHLVQSK LNKKHDQVVV DIPDGAAKQS TEDVSRVGAA ALATEKSTRK QLNCKRCRDT 900 MAYGSPVALY RPAMLSMLAI AAVCVCAALL FKSSPEVIFS FRPFRWEQLE YGAE

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence Send to blast

MELGGSLRRV YGSVVSEPLS GLGKSTEWDL NDWTWDGDFL RAAPLTAVPS DCRSRKFFPI  60
GFDPPVKDGC LNFLSHEHVL EDGMEKRDTE KRRRHIEINE EEDNGSLSLK LGGHVPPVVD  120
GDSGKWEKGR KKSKLSDSQS SRAVCQVEDC KADLSSAKDY HRRHKVCEVH SKASRALVGN  180
VMQRFCQQCS RFHALEEFDE GKRSCRRRLA GHNKRRRKAH PENVVATSAL TDEQGAKYLL  240
TSLLRILSNT QSNSSEQTND QELLSHLLRN LATVAGSAGT TSPSRLLPSS QNSHNMGTVH  300
KETSPDGRGF TLPFDSPHKS TLTDIVQVET ACETSPPCSS NGSAKVGRIK MSGIDLNSPY  360
DDTEDHMEDF VDNAPHDNPE NVSPCLVPWS FKEPQRSSPL QNSGNSVSLW SQSPSTSSGE  420
SRTHTDRIVF KLFGKNPSDL PLDLRKQILD WLSTSPTDIE SYIRPGCVIL TIYACMDKSN  480
WDELYYNLHS SLRKLLDESC DPFWRTEWIY TRVQHHASFA YNGMLISISG NWLDIHSFFQ  540
KTTGDYLIVA PSCNCTRLHC ALEGKYLLQE SCADTVKDDF LTNQEEQVQC ISFSCTIPNA  600
VGRGFIEVED CCLSSSFFPF IVAEKDVCTE IRGLENIIDA TNDATPDTSK CEARSQALNF  660
VHEIGWLLHK THLVFRSGKL SEDLDPFPFW RYKFLIEFAI DHEWPAVARK LLDVLMDGTV  720
VADGSMSVFA ALSDVGLLHR AVRKTSLPMV KFLLTYQPSG ISVQTGDAHE QVAGNRFLFK  780
PDAAGPGGLT PLHVAAGLDD SEAVIDSLTE NPASVGIEAW KSARDSAGLT PHDYARLRGH  840
HSYIHLVQSK LNKKHDQVVV DIPDGAAKQS TEDVSRVGAA ALATEKSTRK QLNCKRCRDT  900
MAYGSPVALY RPAMLSMLAI AAVCVCAALL FKSSPEVIFS FRPFRWEQLE YGAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	144	218	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678395993

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020547976.1	0.0	LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 1
TrEMBL	A0A2G9I0L1	0.0	A0A2G9I0L1_9LAMI; Uncharacterized protein
STRING	XP_004297083.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1