PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678394474
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 495aa    MW: 53615 Da    PI: 7.3089
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678394474genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43e-33242298259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK+vkg +fprsYY+Ct+a+Cpvkkkvers  d++++ei+Y+g+Hnh+
  678394474 242 DDGYNWRKYGQKQVKGGDFPRSYYKCTHASCPVKKKVERSL-DGQITEIIYRGQHNHS 298
                8****************************************.***************7 PP
2WRKY105.92.1e-33415473159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+C+++gC+ +k+ver+a+dpk+v++tYeg+Hnh+
  678394474 415 LDDGYRWRKYGQKVVKGNPNPRSYYKCSHPGCSIRKHVERAATDPKAVITTYEGKHNHD 473
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-29229300IPR003657WRKY domain
SuperFamilySSF1182901.01E-25239300IPR003657WRKY domain
SMARTSM007742.4E-35241299IPR003657WRKY domain
PROSITE profilePS5081123.376242300IPR003657WRKY domain
PfamPF031062.3E-25242297IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-37400475IPR003657WRKY domain
SuperFamilySSF1182904.84E-29407475IPR003657WRKY domain
PROSITE profilePS5081137.562410475IPR003657WRKY domain
SMARTSM007744.8E-38415474IPR003657WRKY domain
PfamPF031065.4E-26416473IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MADKQPPPSL KHPPSVKNPP AITLPPRSGI DLFTGGAGAS PGPMTLVSSF FAENDPETDC  60
RSFSQLLAVD GGGGATTTSS TVKEYSVTAD ADSSGGTGGF TFQQRGAQTV SRPQEMVAIP  120
TGMSLSNYLD SGVFFNPSSQ VTNWLILPDL LSSFFDFVAC SAAFGGMNQG VTGNEDSISE  180
SQVENKFQAP YPSFSAAAAP NLQQQIAAPM QELKLLKEPY DVSAGADPRQ RTSNLVVDKP  240
SDDGYNWRKY GQKQVKGGDF PRSYYKCTHA SCPVKKKVER SLDGQITEII YRGQHNHSPP  300
SKRNRDTGNA TAEAVANPQG NSGFRSESLP GGFNKLNGAA TYSSSLRDQD PCQATPERLS  360
GSNDSDEVDD SETRANERSS EPESKRRIVE AQGSSHRTVT EPRIVVQTTS EVDLLDDGYR  420
WRKYGQKVVK GNPNPRSYYK CSHPGCSIRK HVERAATDPK AVITTYEGKH NHDAPTSKNS  480
SNMQSLHSRQ HSDFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40242475878Probable WRKY transcription factor 4
2lex_A2e-40242475878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678394474
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070970.11e-154probable WRKY transcription factor 3 isoform X2
TrEMBLA0A2G9GES31e-155A0A2G9GES3_9LAMI; Uncharacterized protein
STRINGXP_009597443.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-118WRKY DNA-binding protein 3