PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678391618 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NAC | ||||||||
Protein Properties | Length: 223aa MW: 25660.3 Da PI: 9.4936 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 183.4 | 5.4e-57 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv +yL +kv+g+k+e+ +vi+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat+sgyWkatgkd++v s +++ 678391618 6 LPPGFRFHPTDEELVAYYLYRKVTGRKIEI-DVIPEVDLYKCEPWDLPdKsFLPSKDLEWYFYSPRDRKYPNGSRTNRATRSGYWKATGKDRAVES-GKR 103 79****************************.99**************96434555777*************************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kktLv+y+grap+g +tdWvmheyrl 678391618 104 TVGMKKTLVYYRGRAPNGIRTDWVMHEYRL 133 ****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-65 | 2 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.223 | 6 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGQMTLPPGF RFHPTDEELV AYYLYRKVTG RKIEIDVIPE VDLYKCEPWD LPDKSFLPSK 60 DLEWYFYSPR DRKYPNGSRT NRATRSGYWK ATGKDRAVES GKRTVGMKKT LVYYRGRAPN 120 GIRTDWVMHE YRLAADSPSD SYALCRVFKK NIAMTNDVEA SAAAVKITET TPTTTPEMSA 180 SNFSLESPFT QVKIYLNFTI PVPGMIPVWI FSLPQHDSRF IFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-58 | 2 | 150 | 11 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678391618 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095829.1 | 9e-95 | NAC transcription factor 29 | ||||
Swissprot | Q9FFI5 | 4e-79 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A314UQ03 | 4e-91 | A0A314UQ03_PRUYE; NAC domain-containing protein 86 | ||||
TrEMBL | A0A498JYR8 | 4e-91 | A0A498JYR8_MALDO; Uncharacterized protein | ||||
STRING | XP_008371963.1 | 7e-92 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4621 | 24 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 3e-86 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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