PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678378683

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NF-YB

Protein Properties

Length: 204aa MW: 22796.3 Da PI: 7.1285

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678378683	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	176.1	3.4e-55	41	136	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkkv+P+n+kisk+aketvqecvsefisfvt+easdkcqrekrktingdd+lwa+ tlGfe yv+plk+yl+kyr++eg+k 678378683 41 KEQDRFLPIANVGRIMKKVIPGNGKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDILWAIITLGFEAYVDPLKIYLTKYRDMEGQK 136 89*******************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-51	34	149	IPR009072	Histone-fold
SuperFamily	SSF47113	3.88E-39	43	143	IPR009072	Histone-fold
Pfam	PF00808	4.7E-28	46	110	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.1E-19	74	92	No hit	No description
PROSITE pattern	PS00685	0	77	93	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.1E-19	93	111	No hit	No description
PRINTS	PR00615	2.1E-19	112	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MKRKRENIRA EDDHGGTCPE TSSSNTTSSL NNNNDTNNNN KEQDRFLPIA NVGRIMKKVI 60 PGNGKISKEA KETVQECVSE FISFVTGEAS DKCQREKRKT INGDDILWAI ITLGFEAYVD 120 PLKIYLTKYR DMEGQKLNAP KQQQIDQQQN HQTLGFGGSG AGGVYSSSSV SHPSSFMAND 180 HHLFPLPFSQ PSPLPKPDTD EHWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	7e-45	41	131	2	92	Transcription factor HapC (Eurofung)
4g92_B	7e-45	41	131	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678378683

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099714.1	4e-75	nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	1e-65	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A2G9HQX5	4e-71	A0A2G9HQX5_9LAMI; CCAAT-binding factor, subunit A (HAP3)
STRING	PGSC0003DMT400043176	3e-71	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	8e-63	nuclear factor Y, subunit B7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]