PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678373718
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family G2-like
Protein Properties Length: 406aa    MW: 44282.5 Da    PI: 7.5538
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678373718genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.3e-31190245156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  678373718 190 KARRCWSPDLHRRFVKALQILGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 245
                68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.433187247IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-28187248IPR009057Homeodomain-like
SuperFamilySSF466895.02E-17188248IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-26190245IPR006447Myb domain, plants
PfamPF002491.2E-6192243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDSPCEMSFE CKPHLKMHET QKLEEFLSRL EEERHKIEAF KRELPLCTQL ITDAMEASRQ  60
RLQTGKSKPV LEEFIPINKG SDSSENDAVE VSHADRSSWM TSAQLWNQEP DKTHPPPHEA  120
EIKFGLNGGK SRMGAFHPFP SRDKSSPSEH EGFPELALAS NHSGHDIRSS PESKRDHGGG  180
GGGGSTAQRK ARRCWSPDLH RRFVKALQIL GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ  240
KYRLHTRRPS PTPQAAVPAP PQVVVLGGIW VPPEYAAAAA AAQSGAPAAA LYAPPPHPFC  300
SPVAAVPQEL YPGMAPSPPS SVHRHHHHAG AHRRMYNKPP LTQSQINLSP ESGVQGGGNG  360
NPSESIEDGK SESGSWKVDS GMENAGERRR AEGGEECNTS IVSLKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-14190243255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-14190243255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-14190243154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14190243154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14190243154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14190243154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-14190243255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-14190243255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-14190243255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-14190243255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-14190243255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-14190243255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678373718
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842020.11e-122PREDICTED: uncharacterized protein LOC105962262 isoform X2
SwissprotQ9ZQ855e-80EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A2G9H0V81e-137A0A2G9H0V8_9LAMI; Uncharacterized protein
STRINGMigut.H01532.1.p1e-122(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87942229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.16e-60G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]