PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678370862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 407aa MW: 43012.9 Da PI: 8.9923 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H 678370862 53 FICEICNKGFQRDQNLQLHRRGH 75 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.7 | 4.4e-05 | 129 | 151 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k + s+Lk H +t+ 678370862 129 YRCDRCSKKYAVLSDLKAHVKTC 151 9********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-5 | 52 | 75 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.89E-8 | 52 | 75 | No hit | No description |
Pfam | PF12171 | 4.7E-5 | 53 | 75 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.845 | 53 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 53 | 75 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 200 | 94 | 124 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.5E-6 | 117 | 150 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.89E-8 | 124 | 149 | No hit | No description |
PROSITE profile | PS50157 | 8.767 | 129 | 157 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 51 | 129 | 149 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MEEEADNLTI SPAVSGESKA VSSKKKRNLP GMPDPDAEVI ALSPKALLAT NRFICEICNK 60 GFQRDQNLQL HRRGHNLPWK LRQRTSKEVR KRVYVCPEPT CVHHDPARAL GDLTGIKKHF 120 CRKHGEKKYR CDRCSKKYAV LSDLKAHVKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL 180 AQETARTQPA ALAGDLNVQA VGPPIMSSAS GSSTPPPPTP SADVLSPVLS VQTAVAAAEL 240 PENRNANLQS PAMLMVTSTG AAPASSGSCT ISGGVIGDHG RSFCIFASSA SELTQSSQSH 300 PPQSPFPSLL RPIVGAAGGP SSDPISLTLS PSLYGSLPSF PAVEQNPQSV YFSSPSSPAV 360 MSATALLQKA AQMGATSSNS SFLHGLRLPA APVSAASAAP WGNSPLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-30 | 125 | 186 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-30 | 125 | 186 | 3 | 64 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678370862 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083713.1 | 1e-146 | protein indeterminate-domain 2-like isoform X1 | ||||
Swissprot | Q9LVQ7 | 1e-119 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A2Z7AM57 | 1e-147 | A0A2Z7AM57_9LAMI; Zinc finger protein JACKDAW-like | ||||
STRING | EMJ26827 | 1e-127 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-110 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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