PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678364764

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 462aa MW: 51139.5 Da PI: 6.5123

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678364764	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.7e-09	301	349	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq 678364764 301 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 349 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.42E-17	296	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.25E-11	296	353	No hit	No description
PROSITE profile	PS50888	15.478	298	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-16	299	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-6	301	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-9	304	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MDMMAGKDAE LQQEGNKPVN YQNITNASMA SVGNTAMDLS ASSAAPMIDS FGPFVWEHRL 60 DAPNFGYSDM NFHDAATSIS SPSIRADMGL HQDLAFTKDI PQPSFPTIMS QRVPHLPTDS 120 DFIERAARLS SFGGTFAQML IPFPHPQSMN PFALKPATGM QSQRDEKDVA EDRKFLKNGT 180 TCGSLFVKHF DEAKCGAGVY GNESDDAEHS QERQLNDMEE NSIPKGLDSK KKRKHAEQDK 240 NKEAVKLEFE RKKESEDTKP IGGKNLTTTS AFGGKHAKTQ CSDLPKEGYV HIRARRGQAT 300 NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QIEFLSMKLA 360 TVYPHMDVNL EEYASKNGFQ SHSAEAPFPA ALHSPQHGLT QMGTSPLIIR TPMNLLPDLE 420 CGSLREPAPQ VPNVWEDELH NIVHMGLNSS VPSSQDVKGS SH

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MDMMAGKDAE LQQEGNKPVN YQNITNASMA SVGNTAMDLS ASSAAPMIDS FGPFVWEHRL  60
DAPNFGYSDM NFHDAATSIS SPSIRADMGL HQDLAFTKDI PQPSFPTIMS QRVPHLPTDS  120
DFIERAARLS SFGGTFAQML IPFPHPQSMN PFALKPATGM QSQRDEKDVA EDRKFLKNGT  180
TCGSLFVKHF DEAKCGAGVY GNESDDAEHS QERQLNDMEE NSIPKGLDSK KKRKHAEQDK  240
NKEAVKLEFE RKKESEDTKP IGGKNLTTTS AFGGKHAKTQ CSDLPKEGYV HIRARRGQAT  300
NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QIEFLSMKLA  360
TVYPHMDVNL EEYASKNGFQ SHSAEAPFPA ALHSPQHGLT QMGTSPLIIR TPMNLLPDLE  420
CGSLREPAPQ VPNVWEDELH NIVHMGLNSS VPSSQDVKGS SH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678364764

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077884.1	1e-122	transcription factor bHLH49
TrEMBL	A0A2G9I0E5	1e-119	A0A2G9I0E5_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	3e-76	bHLH family protein