PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678364209
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 445aa    MW: 48090.5 Da    PI: 6.6046
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678364209genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.5e-07396416525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                +C+ff  +  C+ G++C+F H
  678364209 396 PCMFFNTSKGCRNGGNCPFLH 416
                8******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.624391419IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-5395416IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4395417IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5396420IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MVNMEGSKKV KRVTWASDLD LCQVRMFLVD ESPSEVAIGT QDHLQAKASG SALHEVLASY  60
ANLPPGFEGL QHANSWRAKL SQIPLVKWKF PTRFQVNRDW SVVAGEESTE VECQNQRELG  120
ILEAIYPRPS AIPPNPSGLD TAEYANNAEL TPVIPLTPIE EEDTSMDLKP GFNPAGNVQS  180
GHGASDAMAT LTSIIAGTDQ GNLIDRELLI KILSDPKMVE QLVASHGRPS DVQSMPSSTQ  240
ILTPSSSFPS FSPSSKQQDI PSSGASGTQP TRLQILSSQY VPTVRPSPMA PLTSVTTHIP  300
RPDVIPATGT VIAPPFFPPG SIPNLRHPPA EVVSTASPSM AVPGMKDINY YKSLIQQHGG  360
ERREPTPTPQ FNIQSSQEQT TAMGKSRESK PKILKPCMFF NTSKGCRNGG NCPFLHELVP  420
QLRVGTSSEV PSTKRLKLDS EITGS
Cis-element ? help Back to Top
SourceLink
PlantRegMap678364209
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083502.11e-142zinc finger CCCH domain-containing protein 6
TrEMBLA0A2G9GJ091e-127A0A2G9GJ09_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA514779