PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678354148
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family RAV
Protein Properties Length: 285aa    MW: 32903.9 Da    PI: 9.2742
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678354148genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.22.3e-091159256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
               ++kGV    ++g W A+I+       + +r++lg+f ++ +Aa a++ a+ kl+ e
  678354148 11 RFKGVV-PQQNGHWGAQIYT------NhQRIWLGTFKSEVDAAMAYDSAAIKLRSE 59
               578885.556899****988......44**********99*************975 PP
2B382.53.9e-26132231187
                EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                f+k+ltpsdv+k++rlv+pk++a +h             +++  ++++l + d++ + W+++++y+k+s+++v+t+GW++Fvk+++L++ D++ F+l ++
  678354148 132 FQKELTPSDVGKLNRLVIPKRYAIKHfpnvpesseaintDSEVGNGVQLEFFDSQMNLWKFRYSYWKSSQSFVFTRGWSQFVKEKRLRQQDIIAFYLYES 231
                99*************************77766665555533334677777777777****************************************7654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.9371166IPR001471AP2/ERF domain
CDDcd000181.17E-211168No hitNo description
SMARTSM003802.2E-191172IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-151167IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-161166IPR001471AP2/ERF domain
PfamPF008471.6E-41258IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.5E-31129239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-25130232IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-23131228No hitNo description
SMARTSM010191.1E-17132244IPR003340B3 DNA binding domain
PfamPF023623.5E-23132231IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293132250IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTTTKSSRVE RFKGVVPQQN GHWGAQIYTN HQRIWLGTFK SEVDAAMAYD SAAIKLRSED  60
SQRNFPWTSI TAQEPSFQSL LTKDAVLNMI KDGSFSSRFA DFLRSRQGGA IDEGSKGLSL  120
HRNDDFLCTL LFQKELTPSD VGKLNRLVIP KRYAIKHFPN VPESSEAINT DSEVGNGVQL  180
EFFDSQMNLW KFRYSYWKSS QSFVFTRGWS QFVKEKRLRQ QDIIAFYLYE SRNGGCWRQP  240
FFMIDVARKN DSENNETKRE KDVSLEHPST GEEEKGFRLF GVQIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-3013122613100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678354148
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086824.11e-130AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-89RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLS8DIS21e-128S8DIS2_9LAMI; Uncharacterized protein
STRINGVIT_11s0037g00010.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.15e-92RAV family protein