PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678350336
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 571aa    MW: 63224.2 Da    PI: 6.9484
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678350336genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.1e-24178279199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                f k+lt+sd+++ g l++p+ +ae++          ++  +t++ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD+vvF    + +++e+
  678350336 178 FSKTLTQSDANNGGGLSVPRFCAESIfpklettV--EPPVQTISAKDIHGVTWKFRHIYRGTPRRHLLTSGWNAFVNQKRLIAGDSVVFV---KmENGEM 272
                88*********************999**998543..334459************************************************...449999* PP

                EEEEE-S CS
         B3  93 vvkvfrk 99 
                +++v+rk
  678350336 273 YIGVRRK 279
                *****98 PP
2Auxin_resp99.64.3e-33322403383
  Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 + a+++++FevvY+Pra+t+eFvv+++ v+++l v+++ GmR++mafeteds ++++ +Gtv++ +  dpv+Wp S+W++L+
   678350336 322 RLAANRQPFEVVYYPRAGTPEFVVSASAVRASLFVQWCTGMRIRMAFETEDSLRTSWfMGTVSSPQVHDPVHWPASPWKLLQ 403
                 67899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-34172280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-28174282IPR015300DNA-binding pseudobarrel domain
CDDcd100174.42E-22177278No hitNo description
PROSITE profilePS5086312.943178280IPR003340B3 DNA binding domain
SMARTSM010191.2E-21178280IPR003340B3 DNA binding domain
PfamPF023621.5E-21178279IPR003340B3 DNA binding domain
PfamPF065071.6E-28322403IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MPPSGRQEGS FQVSVTVFVF VHGWILRVKI WVLNFRVNDL VCFVERFQGG NGKTGAMINV  60
MNRKEEEAEE RGMNPQLWAA CAGGISEMPP ENSTVYYFPQ GHAEHALEKV DFAGFPRVPP  120
LVPCTVSWVK YLADAENDEV YAKIGLIPFQ GTEVDFAVDG NGFLAFDRNG ERKKTESFSK  180
TLTQSDANNG GGLSVPRFCA ESIFPKLETT VEPPVQTISA KDIHGVTWKF RHIYRGTPRR  240
HLLTSGWNAF VNQKRLIAGD SVVFVKMENG EMYIGVRRKK MLPILNAASY RALFPDFLPQ  300
TGNTVKGGHV KRTPESVLES VRLAANRQPF EVVYYPRAGT PEFVVSASAV RASLFVQWCT  360
GMRIRMAFET EDSLRTSWFM GTVSSPQVHD PVHWPASPWK LLQVTWDEPD FLQNVDGVNP  420
WQVELVLDPL IPDFPHPHLP PVLKRPRLLE PPLDFPLHLP MLIGNPLSPS SPLCCFPDNI  480
SAAGLQGPRL LRLGFPPVKR NDSQPGVNAT AAGDKGEVKK EADPTAPAFI LFGQPILTAE  540
QISSQQRTTT AADASPPPAP AENPPDETQG K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-747342451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678350336
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235546.10.0PREDICTED: auxin response factor 18-like isoform X2
SwissprotQ93YR91e-153ARFP_ARATH; Auxin response factor 16
TrEMBLA0A2G9GV600.0A0A2G9GV60_9LAMI; Auxin response factor
STRINGXP_009784518.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-150auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]