PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678338204 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 237aa MW: 26515.4 Da PI: 6.6913 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.3 | 1.1e-17 | 55 | 107 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ Fe +++ e++ eLA+ lgL+ rq+ +WFqNrRa+ k 678338204 55 KRRLDVEQVRALEKSFELGNKLEPERKMELARALGLQPRQIAIWFQNRRARSK 107 557899*********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 128.7 | 2.4e-41 | 53 | 144 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl eqv++LE+sFe +kLeperK+elar+Lglqprq+a+WFqnrRAR ktkqlEkdy++Lkr+++alk++n++L++++++L++++ 678338204 53 EKKRRLDVEQVRALEKSFELGNKLEPERKMELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDVLKRQFEALKADNDSLKSQNKNLQSQIL 144 69**************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.6E-19 | 36 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.876 | 49 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-18 | 52 | 113 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.2E-15 | 54 | 107 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.40E-16 | 54 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-19 | 57 | 116 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.9E-6 | 80 | 89 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 84 | 107 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.9E-6 | 89 | 105 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.2E-15 | 109 | 149 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MFQGHESIPQ FPSASPSAPD FHGFLMRRSA SYSGAEVPPE DDMSDDGSQF QGEKKRRLDV 60 EQVRALEKSF ELGNKLEPER KMELARALGL QPRQIAIWFQ NRRARSKTKQ LEKDYDVLKR 120 QFEALKADND SLKSQNKNLQ SQILSLKKRE SLEGAINLNR ETEGSWSNAT ADNTGAAALL 180 FSPTMAHGGG GFTELLHGST RRNNPSTPAG SEGLCNFFGG IEENPGFWPW TDQQNFH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 109 | RRARSKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678338204 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098601.1 | 2e-94 | homeobox-leucine zipper protein HOX21 | ||||
Swissprot | Q8LFD3 | 2e-68 | ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23 | ||||
TrEMBL | A0A4D9B237 | 8e-92 | A0A4D9B237_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.H00906.1.p | 3e-80 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26960.1 | 9e-71 | homeobox protein 23 |
Publications ? help Back to Top | |||
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