PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678333450
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 554aa    MW: 61829 Da    PI: 6.3286
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678333450genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.41e-21108208299
                EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                +k+lt+sd+++ g l++p++ ae++        +++ +  ++  +d +g +W++++i+r+++ r++lt+GW++Fv++++L +gD+vvF   + +++el++
  678333450 108 EKILTQSDANNGGGLSVPRNLAETIlppldysANPPVQ--DIFCKDVHGGTWKFRHIHRGTPLRHLLTTGWSNFVNQKRLIAGDSVVFI--RAENGELFI 203
                699**************************996555555..8************************************************..4499999** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +v+++
  678333450 204 GVRKA 208
                *9975 PP
2Auxin_resp91.61.3e-30240323183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa  a+++++Fev Y+Pr+ tseF+v++++v +a++++++ Gm f+ma+et++ s+ ++ +Gtv + +  dp rWp+S+W+sL+
   678333450 240 AAYLAASSQPFEVEYYPRSNTSEFCVSASSVAAAMRIQWCSGMTFQMALETDETSKVSWfTGTVNSFEIKDPHRWPDSPWKSLQ 323
                 5778999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-31102210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-26106207IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-17107209IPR003340B3 DNA binding domain
PROSITE profilePS5086312.746107209IPR003340B3 DNA binding domain
PfamPF023623.0E-19108208IPR003340B3 DNA binding domain
CDDcd100177.34E-18109207No hitNo description
PfamPF065073.4E-26240323IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MKRRETNIDR DIWHVLAGSI IKIPHKNLQV FYFPQGHGEH TLTDVDFGCF PNIPSMIPCR  60
IIAARYLVNP ESDEIYAIIR LDPLLEKNID FGSNDMQSGD MTKCMSSEKI LTQSDANNGG  120
GLSVPRNLAE TILPPLDYSA NPPVQDIFCK DVHGGTWKFR HIHRGTPLRH LLTTGWSNFV  180
NQKRLIAGDS VVFIRAENGE LFIGVRKAKK SFSLGGSFDE RNSKLLTADR KVRPESVLEA  240
AYLAASSQPF EVEYYPRSNT SEFCVSASSV AAAMRIQWCS GMTFQMALET DETSKVSWFT  300
GTVNSFEIKD PHRWPDSPWK SLQVTWDEPK RLQNVKCVNP WSVEIKSGVQ FPPLSLFCEK  360
RKKLRASFGL DFPFEHDIPI PSFARMPLVP NNPLFVPEDD MHSGKQGARQ GQAMLADLGY  420
GNKFQMGLFP SNCADLHPCP NVDIVSKTTL DDKENVSCNL SIGSSRKVQE KPCEQRTPQF  480
LLFGQPIFAE VHESNEDIDA NAAYGSITTV SNFGVTTSSP RAELMRAPAS ALGSDQLLEA  540
QRDESQGLDS SRSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-70434447388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678333450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089918.10.0auxin response factor 18-like
RefseqXP_020552218.10.0auxin response factor 18-like
SwissprotQ93YR91e-144ARFP_ARATH; Auxin response factor 16
TrEMBLA0A191T8S31e-177A0A191T8S3_SALMI; Auxin response factor
STRINGcassava4.1_004716m1e-170(Manihot esculenta)
STRINGXP_009598798.11e-170(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-146auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]