PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678330589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 815aa MW: 88967.2 Da PI: 5.7773 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.4 | 3.9e-21 | 134 | 189 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k 678330589 134 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMK 189 688999***********************************************999 PP | |||||||
2 | START | 197.4 | 6.4e-62 | 338 | 563 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 ela++a++elvk+a++e+p+W +s e++n+de++++f++ + +++ea+++sg+v+ ++ lve+l+d++ +W e+++ + +t++vis+ 678330589 338 ELALAATDELVKMAQLEDPLWIRSLetgtEILNEDEYVRNFSSCIGlkpngFTTEASKESGLVIINSLALVETLMDSN-KWAEMFPcivaRTTTTDVISN 436 57999************************************9888899******************************.********************* PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179 g g lqlm+aelq+lsplvp Rd f+R+++ql +g+wv+vdvSvd ++ p + + +++lpSg+l+++++ng+skvtwveh +++++ +h+ 678330589 437 GmagtrsGSLQLMQAELQVLSPLVPvRDLHFLRFCKQLADGVWVVVDVSVDAVRETPGcPPAYPTCRRLPSGCLVQDMPNGYSKVTWVEHSEYDASEVHQ 536 **************************************************************************************************** PP HHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 180 llrslvksglaegaktwvatlqrqcek 206 l+r+l++sg +g +w atlqrqce+ 678330589 537 LYRPLINSGFGFGGPRWIATLQRQCEC 563 *************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.61E-21 | 118 | 191 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 120 | 185 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.605 | 131 | 191 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-19 | 132 | 195 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.76E-19 | 133 | 191 | No hit | No description |
Pfam | PF00046 | 1.2E-18 | 134 | 189 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 166 | 189 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.231 | 329 | 566 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-36 | 331 | 563 | No hit | No description |
CDD | cd08875 | 2.62E-106 | 333 | 562 | No hit | No description |
SMART | SM00234 | 1.4E-48 | 338 | 563 | IPR002913 | START domain |
Pfam | PF01852 | 2.7E-53 | 338 | 563 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 5.0E-5 | 456 | 546 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 7.55E-24 | 586 | 802 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 815 aa Download sequence Send to blast |
MNFGDFLDST GAIAADLPYA NAKIAIAAAA APPPPSANNT NAMPSGAIAH PQLISQTLLP 60 NKPIFNGGST GLSLALQSGM DGQGEVARIG ENFDGSNVGG RRSRDEEHES RSLSDNFDGG 120 SGDDLDGTDK PPRKKRYHRH TPQQIQELEA LFKECPHPDE KQRLELSKRL SLETRQVKFW 180 FQNRRTQMKT QLERHENSLL RQENDKLRAE NMSMREAMRN PMCTNCGGPA IMGEISLEEQ 240 HLRVENARLK DELDRVCVLA GKFLGRPVSS FTNSIAPPYP NSSLELGVGA NGYGAFNTSM 300 LPLDLPDFVA PLPMSTNKPT MNTSAPVDRS LERSMYLELA LAATDELVKM AQLEDPLWIR 360 SLETGTEILN EDEYVRNFSS CIGLKPNGFT TEASKESGLV IINSLALVET LMDSNKWAEM 420 FPCIVARTTT TDVISNGMAG TRSGSLQLMQ AELQVLSPLV PVRDLHFLRF CKQLADGVWV 480 VVDVSVDAVR ETPGCPPAYP TCRRLPSGCL VQDMPNGYSK VTWVEHSEYD ASEVHQLYRP 540 LINSGFGFGG PRWIATLQRQ CECLAILMSS SAPPKDHHTA ISAGGRRSML KLAQRMKNNF 600 CAGVCASSVH KWNKIQTENV DDDVRVMTRK SVDDPGEPQG IVLSAATSVW LPMPPQRLFD 660 FLRNEHLRSE WDILSNGGPM QEMAHIAKGQ DQGNCVSLLR ASAMSANQSN MLILQETCID 720 AAGSLVVYAP VDIPAMHVVM NGGDSSYVAL LPSGFAIVPD GRGDAATKGS LLTVAFQILV 780 NSLPTAKLTV ESVETVNNLI SCTVQKIKAA LRCDS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678330589 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093167.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | S8CZA1 | 0.0 | S8CZA1_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_001764m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1626 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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