PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678329478
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 678aa    MW: 75334.5 Da    PI: 5.9762
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678329478genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-23113214199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++         ++ +  +++ +d +g sW++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   +++++ l+
  678329478 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--KVVAKDIHGDSWKFRHIYRGTPRRHLLTTGWSAFVNHKKLVAGDSIVFL--RSEDGDLC 208
                89****************************997556555..7************************************************..44888889 PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  678329478 209 IGLRRA 214
                999986 PP
2Auxin_resp104.61.2e-34261343283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a  a+++ +Fe++Y+Pra+t+eF++k+++v++a+ +++  GmRfkmafe+edss++++ +Gtv++v+ +dp +WpnS+Wr+L+
   678329478 261 AFMAANGHPFEIIYYPRAGTPEFCIKASSVRNAMATQWRQGMRFKMAFESEDSSRISWfMGTVASVQFSDPKKWPNSPWRLLQ 343
                 567899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-36103216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-28109214IPR015300DNA-binding pseudobarrel domain
CDDcd100175.80E-21112213No hitNo description
PROSITE profilePS5086312.985113215IPR003340B3 DNA binding domain
PfamPF023624.5E-21113214IPR003340B3 DNA binding domain
SMARTSM010192.4E-20113215IPR003340B3 DNA binding domain
PfamPF065076.1E-30261343IPR010525Auxin response factor
PROSITE profilePS5174515.369562642IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MKNSADKSVD PELWHACAGG TVEIPEANTR VFYFPQGHAE HAFGHVDFGV LPRIPPMIPC  60
RVAYVKFLAD PETDEVHARI GLIPLRNNDV VGFDDEGDTG SKMSESIEKP TSFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QKVVAKDIHG DSWKFRHIYR GTPRRHLLTT  180
GWSAFVNHKK LVAGDSIVFL RSEDGDLCIG LRRAKKECAG LGGYGASSLW DYETKLSPRN  240
ACNGKMRERG RVKPETVLEA AFMAANGHPF EIIYYPRAGT PEFCIKASSV RNAMATQWRQ  300
GMRFKMAFES EDSSRISWFM GTVASVQFSD PKKWPNSPWR LLQVIWDEPD LLHNVKCVSP  360
WLVEVVSSIP LLSIPPLPSQ RNRLRFPHPM DFTLDGRFPM PSFFGNTLRL SSSICCLPDN  420
IAAGIQGARQ SKLGVPFSDL RIRNEMQMEL FPQRQCKASC ISEDAEDEDI SCLLSMGHNP  480
DQKWEKQEEG RRTQFVLFGQ LILTEEQMSR DHQQGSESPS PSMPEGTSSG EKWRTEVSTP  540
VAMELEKQGL DDATELGLDA PPGICKVFMG PQDVGRTLHL SDLGSYEELY ETLKHMLEID  600
RSDIIGHLLY LDASGGAKQV GEEPFSDFTT SATRLMLLTK PSTVASGAER KLIADFAMAE  660
PRMLGSSSNQ TGPFSAVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-79936851392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap678329478
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089918.10.0auxin response factor 18-like
RefseqXP_020552218.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A191T8S30.0A0A191T8S3_SALMI; Auxin response factor
STRINGXP_008245240.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]