PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678316355
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Dof
Protein Properties Length: 205aa    MW: 21833.6 Da    PI: 9.0379
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678316355genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.42.7e-372178360
     zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                ++l+cprC stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg++rk+ k
  678316355 21 PEQLPCPRCSSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGSSRKSGK 78
               6789***************************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-262078IPR003851Zinc finger, Dof-type
PfamPF027018.7E-332377IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.632478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGSSTTEKKP VVKTTPHHPE PEQLPCPRCS STNTKFCYYN NYNFSQPRHF CKSCRRYWTH  60
GGTLRDIPVG GSSRKSGKRL RASEMVSPDF RRLPPPPPPP ERSPFMAEGK VCGSFTSLLN  120
STAAVTHGAG ILALGGFSLD EASFGIGRGV WPTYGILDGA PAGGASAATH TWHFDNGGDA  180
GGFMGGGDYL AFPDLAISTP ASLLK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678316355
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099306.14e-68dof zinc finger protein DOF3.4
SwissprotQ390882e-47DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBLA0A4D8ZYI24e-63A0A4D8ZYI2_SALSN; Uncharacterized protein
STRINGGLYMA02G06970.26e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45322241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.12e-44OBF binding protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]