PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678309697

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 477aa MW: 50901.5 Da PI: 9.0992

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678309697	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k F r nL+ H r H 678309697 47 FVCDICNKGFQRDQNLQLHRRGH 69 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.96E-7	46	69	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.9E-5	46	69	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.887	47	69	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.021	47	69	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	49	69	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	88	118	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.8E-4	111	144	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.96E-7	118	143	No hit	No description
SMART	SM00355	250	123	143	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MKDSALSGNS SPVKTPAKKK RNLPGTPDPD AEVIALSPKT LLATNRFVCD ICNKGFQRDQ 60 NLQLHRRGHN LPWKLRQRSS KDAKKRVYVC PELGCVHHDP SRALGDLTGI KKHFCRKHGE 120 KKWKCDRCSK KYAVQSDWKA HSKICGTREY RCDCGTLFSR RDSFTTHRAF CDTLAEENAK 180 AQPHAAPNSP KDDSNPIPGT SPPPSEPLPQ PPVATPSPSP PQPPEAPAAL STSMMPSVVS 240 PQRQELLDST VADPVNGETL EENTLPARCS SSRSSSNSVF ASLFVSSAPL QSEPTATAAR 300 FNLLRAISRP IDSLQSSSEA GSLCLSTSQS PLMFASSVGQ YAPSPQPAAM SATALLQKAA 360 QMGPTSSKGS LLRGLGLACS SPSDHDWSSL RLEPSSSPLA AGLGLAISND EASNYKELMM 420 GTQSVFGPKQ TTLDLLGLGN GGSAGGLPAL MTSINHGQMP RYGSNGVQFG TEDMGRR

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MKDSALSGNS SPVKTPAKKK RNLPGTPDPD AEVIALSPKT LLATNRFVCD ICNKGFQRDQ  60
NLQLHRRGHN LPWKLRQRSS KDAKKRVYVC PELGCVHHDP SRALGDLTGI KKHFCRKHGE  120
KKWKCDRCSK KYAVQSDWKA HSKICGTREY RCDCGTLFSR RDSFTTHRAF CDTLAEENAK  180
AQPHAAPNSP KDDSNPIPGT SPPPSEPLPQ PPVATPSPSP PQPPEAPAAL STSMMPSVVS  240
PQRQELLDST VADPVNGETL EENTLPARCS SSRSSSNSVF ASLFVSSAPL QSEPTATAAR  300
FNLLRAISRP IDSLQSSSEA GSLCLSTSQS PLMFASSVGQ YAPSPQPAAM SATALLQKAA  360
QMGPTSSKGS LLRGLGLACS SPSDHDWSSL RLEPSSSPLA AGLGLAISND EASNYKELMM  420
GTQSVFGPKQ TTLDLLGLGN GGSAGGLPAL MTSINHGQMP RYGSNGVQFG TEDMGRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-33	119	180	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-33	119	180	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678309697

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022870585.1	1e-173	protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-149	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2G9G982	1e-163	A0A2G9G982_9LAMI; Ovo transcription factor
STRING	VIT_04s0023g01430.t01	1e-163	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-115	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]