PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678299392

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 427aa MW: 47302.2 Da PI: 6.617

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678299392	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.1e-09	287	335	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq 678299392 287 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 335 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-16	282	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.11E-11	282	339	No hit	No description
PROSITE profile	PS50888	15.478	284	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-16	285	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-6	287	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-10	290	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MDLMAGKDAE LQQEGSCKPM NYQNLPTPSM ASMENMVMDL SAPMIDSFGV ESFVWQHRLD 60 ASNFGYSDMN FHNAGTSPGS PSIRADLGLH QDLVLGKNIS QLSFPSLVSQ TVPHLPTDSD 120 FIERAARLSS FRGSCAQWLS PLPLAHSMNP FALKAETGMQ SQRDEHNVAE DGRLLKNTRE 180 CRSFMNPFRE ARSRVSGNES GDTEYSQEGK PEDLTPKGLH SKKRKKPSEQ QDEESEGGKE 240 NEDTKPKGDS NLTTANASGG NHAKAHGSDL PKEGYVHVRA RRGQATNSHS LAERVRREKI 300 SERMKFLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEL LSLKLAAVYP HLEFNLEQYS 360 TTDGFQSRPG AVPFPAPLHP PQHGFMQMGS SSIIIRRPMN LPPGEPAPQV PDVWEGELHN 420 MVHMGKM

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MDLMAGKDAE LQQEGSCKPM NYQNLPTPSM ASMENMVMDL SAPMIDSFGV ESFVWQHRLD  60
ASNFGYSDMN FHNAGTSPGS PSIRADLGLH QDLVLGKNIS QLSFPSLVSQ TVPHLPTDSD  120
FIERAARLSS FRGSCAQWLS PLPLAHSMNP FALKAETGMQ SQRDEHNVAE DGRLLKNTRE  180
CRSFMNPFRE ARSRVSGNES GDTEYSQEGK PEDLTPKGLH SKKRKKPSEQ QDEESEGGKE  240
NEDTKPKGDS NLTTANASGG NHAKAHGSDL PKEGYVHVRA RRGQATNSHS LAERVRREKI  300
SERMKFLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEL LSLKLAAVYP HLEFNLEQYS  360
TTDGFQSRPG AVPFPAPLHP PQHGFMQMGS SSIIIRRPMN LPPGEPAPQV PDVWEGELHN  420
MVHMGKM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	224	PKGLHSKKRK
2	221	225	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678299392

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077884.1	1e-98	transcription factor bHLH49
TrEMBL	A0A2G9I0E5	1e-97	A0A2G9I0E5_9LAMI; Uncharacterized protein
STRING	GLYMA01G09400.3	1e-89	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	4e-74	bHLH family protein