PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788968
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family AP2
Protein Properties Length: 580aa    MW: 63846.6 Da    PI: 6.2925
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788968genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-11210266155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  ++  g++ k  + g ++ +e+Aa+a++ a++k++g
  676788968 210 SIYRGVTRHRWTGRYEAHLWDnSCKrEGQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 266
                57*******************88885445536655.779999**************98 PP
2AP251.13.2e-16309360155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  676788968 309 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 360
                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-15210276IPR016177DNA-binding domain
CDDcd000181.59E-18210276No hitNo description
PfamPF008479.7E-9210266IPR001471AP2/ERF domain
SMARTSM003801.2E-22211280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-12211275IPR001471AP2/ERF domain
PROSITE profilePS5103217.319211274IPR001471AP2/ERF domain
PRINTSPR003674.0E-6212223IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17309369IPR016177DNA-binding domain
CDDcd000184.50E-24309368No hitNo description
PfamPF008474.1E-11309360IPR001471AP2/ERF domain
PROSITE profilePS5103218.742310368IPR001471AP2/ERF domain
SMARTSM003809.7E-33310374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-17310368IPR001471AP2/ERF domain
PRINTSPR003674.0E-6350370IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MNNNWLGFSL SPYDQNHHRT DVDSSTTTTA VDVAGEYCYD LTSASDESSA VQTSFPSPFG  60
VVLDAFTRDS NSHSRDWDMN GGACNNIHNN DQNGPKLENF LGRTTTIYNT NENGGDRTGG  120
CRGGDGGGGG GGTLGLSMIK TWLRNQPVDN VDNQDNGNGA RGLSLSINSS TTCDSNNYAN  180
NNVVVQEKTI VDSVEATPKK SIESFGQRTS IYRGVTRHRW TGRYEAHLWD NSCKREGQTR  240
KGRQGGYDKE EKAARAYDLA ALKYWGTTTT TNFPMSEYEK EVEEMKHMTR QEYVASLRRK  300
SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FGTQEEAAEA YDIAAIKFRG  360
LSAVTNFDMN RYNVKAILES PSLPIGSAAK RLKEINHPVP SMMISNNVSE CENNTSGWQN  420
ASLQHHQGID LSLLQKHQER YNGYYNGGNL SSESRACFKQ EEQHHFLSNS PSLMTNIDHH  480
SSASDDSVTV CGNAVGYGGY QGFAIPVETS VNCDAFAAAE IAYNARNNYY FAQQMQQQQI  540
QQSPEGDFPV AMSNYGGSNI YVHGEGGGEG APTFTVWNDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788968
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3179040.0AF317904.1 Brassica napus AP2/EREBP transcription factor BABY BOOM1 (BBM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873828.10.0AP2-like ethylene-responsive transcription factor BBM
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLD7LX050.0D7LX05_ARALL; Predicted protein
STRINGAl_scaffold_0006_16500.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein