PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788210
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 172aa    MW: 19370.7 Da    PI: 8.4956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788210genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-184897255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  676788210 48 TFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFPTAEMAARAHDVAALAIKG 97
               59****998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-3948111IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2148106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-3248106IPR001471AP2/ERF domain
PROSITE profilePS5103222.86648105IPR001471AP2/ERF domain
PfamPF008476.9E-124997IPR001471AP2/ERF domain
PRINTSPR003671.9E-104960IPR001471AP2/ERF domain
CDDcd000186.56E-3449107No hitNo description
PRINTSPR003671.9E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDHSSHPDDC RRRFHDPPAQ ATVNTKNQKK KRVKEDNDDE KVVSKHPTFR GVRMRQWGKW  60
VSEIREPKKK SRIWLGTFPT AEMAARAHDV AALAIKGGSA HLNFPELAYH LPRPAKTSSP  120
SPGSTEPSSP AMTAVADDAF SDLPDLLLDV NHKIDGFWDS FPYEEPFFSG SY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1736105272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11031RRRFHDPPAQATVNTKNQKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8423068e-98AY842306.1 Brassica napus transcription factor DREBIII-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634757.12e-89PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ9ZQP35e-80ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A0D3C4D74e-88A0A0D3C4D7_BRAOL; Uncharacterized protein
TrEMBLA0A3N6S1H84e-88A0A3N6S1H8_BRACR; Uncharacterized protein
STRINGBo4g184540.16e-89(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.14e-75ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]