PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676779192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB_related | ||||||||
Protein Properties | Length: 307aa MW: 34777.8 Da PI: 7.2539 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 50 | 94 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E+e++v+a k++G W++I +++g ++t+ q++s+ qk+ 676779192 50 REKWTEAEHEKFVEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 94 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.72E-16 | 44 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.705 | 45 | 99 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.6E-16 | 48 | 97 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.6E-12 | 49 | 97 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-9 | 50 | 90 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-13 | 50 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.78E-9 | 52 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MAMQTDQPKI RQNQEEHCES LCDRASDELI SSTDAFYLKT RKPYTITKQR EKWTEAEHEK 60 FVEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFTKVAR DYGVTSEKSI EIPPPRPKRK 120 PMHPYPRKLV IPDAKEMAYE LTGDKLVSDE DNRSPTSVLS AHGSDGLDSM ASNSPNSSSA 180 DYQHSPGHEL SSSQTDESLS PEAETKQSLK LFGKTFLVGD YNSWTSFNDS EDAKKLDTET 240 QSVGCSSSSE NVETELSGRP VVSEFKRSER SAFSQLKSSV IGMKNVKGFM PYKKRVKVEE 300 NMSYPLW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:23371945}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676779192 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:19805390}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519515 | 1e-164 | AY519515.1 Arabidopsis thaliana MYB transcription factor (At5g37260) mRNA, complete cds. | |||
GenBank | BT010947 | 1e-164 | BT010947.1 Arabidopsis thaliana At5g37260 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020875484.1 | 1e-157 | protein REVEILLE 2 | ||||
Swissprot | F4K5X6 | 1e-153 | RVE2_ARATH; Protein REVEILLE 2 | ||||
TrEMBL | A0A078HLV3 | 1e-154 | A0A078HLV3_BRANA; BnaA05g12950D protein | ||||
TrEMBL | A0A397ZBD3 | 1e-154 | A0A397ZBD3_BRACM; Uncharacterized protein | ||||
STRING | Bostr.9638s0043.1.p | 1e-162 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14432 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 1e-138 | MYB_related family protein |
Publications ? help Back to Top | |||
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