PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676757664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NAC | ||||||||
Protein Properties | Length: 598aa MW: 67016.7 Da PI: 9.2771 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.4 | 8.3e-51 | 13 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lp+G+rF+Ptdeelv +yL++k++g++ ++ ++i+e+di+k+ePwdLp + +k++++ew fF++ d+ky++g+r+nrat +gyWkatgkd++++s +++ 676757664 13 LPVGLRFRPTDEELVRFYLRRKINGHDDDV-KAIREIDICKWEPWDLPdfSVIKTNDSEWLFFCPLDRKYPNGSRQNRATIAGYWKATGKDRKIKSGRNS 111 799************************999.89***************6448888999**************************************9999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+k+tLvf++grapkg +t+Wvmheyr+ 676757664 112 IIGVKRTLVFHSGRAPKGARTNWVMHEYRA 141 ****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-57 | 9 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.102 | 13 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-25 | 14 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0070417 | Biological Process | cellular response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 598 aa Download sequence Send to blast |
MNQNIKILSL DSLPVGLRFR PTDEELVRFY LRRKINGHDD DVKAIREIDI CKWEPWDLPD 60 FSVIKTNDSE WLFFCPLDRK YPNGSRQNRA TIAGYWKATG KDRKIKSGRN SIIGVKRTLV 120 FHSGRAPKGA RTNWVMHEYR ATEEDLSGTN PGQSPFVICK LFKKQELNLP EEEDSKLDEA 180 AELAFSSPTV AASSPDETKS EVSMVVKMED VKRYDIAESS LVISADHNGA CDEATTAKLG 240 DLDWLSSFPD IEPLNYTIFS PLHSQVQSEV GFSFNAFQSG SSDFTGNQNN SSQIQTQYGT 300 NEADIDISDF LDSILDLPDE VPEKQKFVLQ YGFDGALSDQ IAPAYQQQRS AGDISDDVSK 360 TGIKLKTRRE QPSGCATDYR IHGNASRRLR LQSNLDGVKL KNSELQTIKR EVEDTTDMKK 420 RMGSKKKTGF LFRKIVSVRC SYGGLLRAAV VAVLFLIFHL IRGQSMRVTS NPGKKMSKRM 480 TTSQTTKVRH ALASHYQSLL LYTDDSKCTS QENLGSDKSS CSKSQRNRAS TVNKDTNKEQ 540 SQRIQAMAPI VNELGKAIKV DQVHVEATRY HKGKREGIGG PVKKFLVKSF GFSVKGLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-45 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-45 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-45 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-45 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-45 | 3 | 165 | 7 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-45 | 3 | 165 | 7 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00398 | DAP | Transfer from AT3G49530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676757664 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404132.1 | 0.0 | NAC domain-containing protein 62 | ||||
Swissprot | Q9SCK6 | 0.0 | NAC62_ARATH; NAC domain-containing protein 62 | ||||
TrEMBL | V4L5I2 | 0.0 | V4L5I2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006404132.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2416 | 28 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49530.1 | 0.0 | NAC domain containing protein 62 |
Publications ? help Back to Top | |||
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