PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754854
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 375aa    MW: 42339.9 Da    PI: 6.7453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754854genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-05209228120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C k+F+r  n++ H+
  676754854 209 FSCPVCFKTFNRYNNMQMHM 228
                89*****************9 PP
2zf-C2H214.40.00011293315123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C +Cgk F  + + ++H +++
  676754854 293 FMCRKCGKAFAVRGDWRTHEKNC 315
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.38209231IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64209236IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-6209228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
SuperFamilySSF576671.82E-6275313No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5289313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549293313IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808293313IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MTDPYSNFFT DWFKSNPFPH YPNSSTNPSP PPPPSSFFFF PHSGDLHRPP PPPTPPPSPP  60
LREALPLLSL SPANKQQDHH DHQIQEPPST SMDVDYDHHH HQDDHNIDED DHDVTVALHI  120
GLPSPSTQEM ASLLMMSSSS SSSRTTHHHE NLNDKKDLDN DYHHGGAGGG EDDDEDSVGG  180
DGGCRISRLN KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE  240
SLRGTQPTGM LRLPCYCCAP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI KPFMCRKCGK  300
AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GNGHGAYGID GFDEEDEPAS  360
EVEQLDNDHE SMQSK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754854
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544470.0AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBankBT0210890.0BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104073.10.0PREDICTED: zinc finger protein WIP2 isoform X2
SwissprotQ9SVY10.0ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A3P6BK250.0A0A3P6BK25_BRACM; Uncharacterized protein
STRINGXP_010516391.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-172C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]