PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752744
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 505aa    MW: 56496.8 Da    PI: 5.0891
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752744genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2645e-811455052374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL  cA a+++++ +++q++L+ lselas+ gd+++Rlaa+ + AL++++++  s+++++l+  +++   ++   + l  f+evsP++ + + +aN a
  676752744 145 EQLLNPCALAITARNSSRVQHYLCVLSELASSCGDANHRLAAFGLCALQNHISS--SSVSSSLNFASAE---VKMFQKTLLKFYEVSPWFALPNNMANAA 239
                689**************************************************9..8888888888776...4444444555****************** PP

       GRAS 102 Ileavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                Il+ +++e    + +Hi+D+++s+G+QWp+Ll+aL +R+egpp ++RiT+v++ +++          ++g +L  fA +l+++++++v+        +++
  676752744 240 ILQILAQEprdkKDLHILDIGVSHGMQWPTLLEALCCRAEGPPlRVRITVVSDLTADipfaVGPPSYNYGFQLIGFAGSLNINLQISVI-------DKFQ 332
                *******99888889************************99999*********9999999989999*********************96.......5668 PP

       GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                 ++++p+E+l+V+ +++l++l    +s+++er+evLk+++sl+Pk vv++e++ d+ +s++F+++f+++ley+++++ds++ ++    +e+++ Er+l++
  676752744 333 LIDTSPHETLIVCTQFRLYQLK---HSMPDERSEVLKALRSLKPKGVVLCENNGDCsSSGNFAAGFSRKLEYMWKFLDSTSYGF----KEENSEERKLME 425
                89*******************8...88999999***********************9999********************9997....888888999999 PP

       GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 e+++v++ +g+     +e +  W er+++aGF + +++e+a + ak+llrk++ +++ r+e+ +  + l Wk++p+ ++S W+
  676752744 426 GEAKKVLMSSGET----NEGKDVWYERMRRAGFVADAFGEDAIDGAKSLLRKHDsNWEIRMEDADTFAGLLWKGEPVSFCSLWK 505
                9**********99....99***********************************888888888888888**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.329118484IPR005202Transcription factor GRAS
PfamPF035141.7E-78145505IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MSLEETEPPT ETLDNVLGWL EDSMSLTPLP GFNDSDLVHE FDGSQTWEWD QTQDPGYDLL  60
HSYSQDLIAY TDCEATNLEV VTGGPVINSD LPPVLQQPND QSKKRNRNGF IDPHQVKRSA  120
RSKKRANKSS EKSCKDGNKE ERWAEQLLNP CALAITARNS SRVQHYLCVL SELASSCGDA  180
NHRLAAFGLC ALQNHISSSS VSSSLNFASA EVKMFQKTLL KFYEVSPWFA LPNNMANAAI  240
LQILAQEPRD KKDLHILDIG VSHGMQWPTL LEALCCRAEG PPLRVRITVV SDLTADIPFA  300
VGPPSYNYGF QLIGFAGSLN INLQISVIDK FQLIDTSPHE TLIVCTQFRL YQLKHSMPDE  360
RSEVLKALRS LKPKGVVLCE NNGDCSSSGN FAAGFSRKLE YMWKFLDSTS YGFKEENSEE  420
RKLMEGEAKK VLMSSGETNE GKDVWYERMR RAGFVADAFG EDAIDGAKSL LRKHDSNWEI  480
RMEDADTFAG LLWKGEPVSF CSLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-3413650525419Protein SHORT-ROOT
5b3h_E3e-3413650525419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752744
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2425470.0JX242547.1 Sinapis alba isolate SaNSP1 nodulation signaling pathway 1-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407135.20.0scarecrow-like protein 29
SwissprotQ9LRW30.0SCL29_ARATH; Scarecrow-like protein 29
TrEMBLJ7HA420.0J7HA42_SINAL; Nodulation signaling pathway 1-like protein
STRINGXP_006407135.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein