PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676748238
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family DBB
Protein Properties Length: 187aa    MW: 20372.9 Da    PI: 6.5776
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676748238genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.51.8e-05433534
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                C+ +e+  ++ fC  ++  lC  C ++ H
  676748238  4 LCDACESAAAIVFCAADEAALCCPCDEKVH 33
               6**************************998 PP
2zf-B_box27.85.2e-095292238
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
               +++ C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  676748238 52 NAPSCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtHR 92
               7899*****************************66666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.082147IPR000315B-box-type zinc finger
CDDcd000211.84E-5345No hitNo description
SMARTSM003364.8E-6447IPR000315B-box-type zinc finger
SMARTSM003361.8E-135196IPR000315B-box-type zinc finger
PROSITE profilePS501199.35196IPR000315B-box-type zinc finger
PfamPF006435.9E-75292IPR000315B-box-type zinc finger
CDDcd000213.07E-85496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRILCDACES AAAIVFCAAD EAALCCPCDE KVHMCNKLAS RHVRVGLADP SNAPSCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HRRFLLLRQR IEFPGDKPNH ADDLGLRCKE  120
ANRQKISSGR GQESNGNGDH NMIDLNSNPQ RVQESGSTHQ EHGIDVNSTN NHQPVGAVPV  180
GAFKRES
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676748238
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0605701e-107AY060570.1 Arabidopsis thaliana At2g21320/F3K23.8 mRNA, complete cds.
GenBankAY1255731e-107AY125573.1 Arabidopsis thaliana At2g21320/F3K23.8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117418.11e-128PREDICTED: B-box zinc finger protein 18
RefseqXP_013660973.11e-128B-box zinc finger protein 18-like
SwissprotQ9SJU51e-107BBX18_ARATH; B-box zinc finger protein 18
TrEMBLM4EQV71e-127M4EQV7_BRARP; Uncharacterized protein
STRINGBra031180.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.11e-110DBB family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]