PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743670
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 462aa    MW: 51281.2 Da    PI: 6.805
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743670genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.4e-1459103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
        676743670  59 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 103
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-1653109IPR009057Homeodomain-like
PROSITE profilePS5129415.654108IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-756109IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1757106IPR006447Myb domain, plants
SMARTSM007171.3E-1158106IPR001005SANT/Myb domain
PfamPF002493.6E-1259103IPR001005SANT/Myb domain
CDDcd001678.20E-961104No hitNo description
PROSITE profilePS503308.983397416IPR003903Ubiquitin interacting motif
PfamPF028090.15398412IPR003903Ubiquitin interacting motif
PfamPF028090.015441452IPR003903Ubiquitin interacting motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MVSLNPRPAE AFTFFDPVSI GSASDSGLTP VSGRRDTTSF ADDPMTTKIR KPYTIKKSRE  60
NWTEQEHDKF LEALHLFDRD WKKIEAFVGS KTVVQIRSHA QKYFLKVQKS GTNEHLPPPR  120
PKRKARHPYP QKAPKYATLP SHAIGSLPAP LLEPAYLYSS DSQSVLRNPA VSASTSSSQN  180
HESTNLPKPM IEGEEQGVSA AAALPMNRCN SINSTPTLRA VTDPNDEESC EKPHRVMPNF  240
TEVYRFIGSV FDPNTSGHLQ RLKQMDPINM ETVLLLMRNL SVNLTSPEFA EQILEMATID  300
LVRAINTATE FWFIPTTGES LLRQLSGSAS SGSPSPSSHT GEVTGFPAHS NWGNDQIRPP  360
GVGDLGDGYA RHSSSYGSQV HGGTHRDDEL PVYNNDAEEE MIRAAIEASK KDFQEGRHNA  420
RYSPDNDPSS VLSPREAINR EDEDIARAIS MSSYFRRMTL KK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001031568.11e-152Homeodomain-like superfamily protein
SwissprotC0SVG51e-153RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A178UV361e-151A0A178UV36_ARATH; Uncharacterized protein
STRINGBostr.10064s0009.1.p1e-152(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.21e-133MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]