PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676743298 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 33402.2 Da PI: 8.0537 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.2 | 2.7e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrF Ptdeel+v+yL++kv+g +++l +vi ++d+yk++PwdLp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + s +g+ v 676743298 14 LPPGFRFYPTDEELLVQYLCRKVAGYHFSL-QVIGDIDLYKFDPWDLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISS-DGHRV 111 79***************************9.99***************8777899*********************************999998.999** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+apkg+kt+W+mheyrl 676743298 112 GIKKALVFYAGKAPKGTKTNWIMHEYRL 139 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-67 | 9 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.791 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP 60 SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIISSDGHR VGIKKALVFY 120 AGKAPKGTKT NWIMHEYRLI EHSRSRGSSK LDDWVLCRIY KKTSGSQRQA VAPVQACLED 180 HSTNGSSSSS SSQLDDVLDS FPEMNDRSFN LPRMNSLRTL LNGNFDWASL AGLNPIPELA 240 PSTNYGGYDA FRAAEGEAES GLRNSQVDHQ QNSSDLTQSL GYSSTGFGYS GQTFEFRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-108 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-108 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-108 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-108 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-108 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-108 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-108 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-108 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676743298 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352535 | 0.0 | AK352535.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-F07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_567773.1 | 0.0 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
Swissprot | Q93VY3 | 0.0 | NAC72_ARATH; NAC domain-containing protein 72 | ||||
TrEMBL | A0A1J3E8A1 | 0.0 | A0A1J3E8A1_NOCCA; NAC domain-containing protein 72 | ||||
STRING | Bostr.7867s0562.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1435 | 27 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 0.0 | NAC family protein |
Publications ? help Back to Top | |||
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