PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676739504
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 352aa    MW: 39621.1 Da    PI: 4.424
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676739504genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.83.3e-4761341129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                l+pGfrFhPtd elv +yLk+kv gkk+ + ++i+e+diyk+eP dLp k ++++++ +wyfF++r kky++g r+nr+t+sgyWk+tgkd++v+  ++e
  676739504   6 LAPGFRFHPTDVELVRYYLKRKVLGKKFLT-NAIAEIDIYKFEPPDLPdKsSLRTGDLKWYFFCPRFKKYPNGGRANRSTESGYWKTTGKDRDVTY-DDE 103
                579************************888.88**************95346677888**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                +vg  +tL+++ g++p+ge+tdWvmheyrle
  676739504 104 VVGKIRTLIYHYGKTPRGERTDWVMHEYRLE 134
                *****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-573156IPR003441NAC domain
PROSITE profilePS5100554.2736156IPR003441NAC domain
PfamPF023652.7E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGKNNLAPGF RFHPTDVELV RYYLKRKVLG KKFLTNAIAE IDIYKFEPPD LPDKSSLRTG  60
DLKWYFFCPR FKKYPNGGRA NRSTESGYWK TTGKDRDVTY DDEVVGKIRT LIYHYGKTPR  120
GERTDWVMHE YRLEDRALAL RNVPQDTYVL CKLFKKNGLG PRHGSEYGAP FREEDWSDAE  180
KEDTENLVAI PSAENADPGP SKEISLVASA SHSYSPKDCF AGVISESCVS DVPQLTATVL  240
PSLTSDVVAH TPLSSSPLLE VPQAPQDDDE FYSMLDLFVV DNDESLLLDG FNDQYEVRHE  300
PEVRVVEEAP FSLGDGYLSG IQDLNDELFI EIEDLIEPST PPDAQAGYPS DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-44515716166NO APICAL MERISTEM PROTEIN
1ut4_B1e-44515716166NO APICAL MERISTEM PROTEIN
1ut7_A1e-44515716166NO APICAL MERISTEM PROTEIN
1ut7_B1e-44515716166NO APICAL MERISTEM PROTEIN
3swm_A1e-44515719169NAC domain-containing protein 19
3swm_B1e-44515719169NAC domain-containing protein 19
3swm_C1e-44515719169NAC domain-containing protein 19
3swm_D1e-44515719169NAC domain-containing protein 19
3swp_A1e-44515719169NAC domain-containing protein 19
3swp_B1e-44515719169NAC domain-containing protein 19
3swp_C1e-44515719169NAC domain-containing protein 19
3swp_D1e-44515719169NAC domain-containing protein 19
4dul_A1e-44515716166NAC domain-containing protein 19
4dul_B1e-44515716166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676739504
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382770.0KF738277.1 Brassica napus NAC transcription factor 103 (NAC103.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643048.10.0NAC domain-containing protein 82-like
RefseqXP_013643189.10.0NAC domain-containing protein 82-like
SwissprotQ9FY821e-129NAC82_ARATH; NAC domain-containing protein 82
TrEMBLV4KVV10.0V4KVV1_EUTSA; Uncharacterized protein
STRINGXP_006394207.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-163NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]