PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737930
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 689aa    MW: 79059.2 Da    PI: 5.632
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737930genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.11e-2091574128
        NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknra.tk...sgyWkatgkdkevl 93 
                G++F+P d+el+++ L +k++gk  e+++ i   d+y+ ePw L+++  +  +++ewy+F++r + ++     g+++nr+ t     g Wk   k ++++
  676737930   9 GVQFDPYDDELIQKCLIPKLRGKYSECKDSIVMKDVYEKEPWLLDHTRGSffKKNEWYYFTTRTQVSKkkngCGRNSNRKiTGdnnGGSWKLNAK-EDIK 107
                9**************************999**************84222245889******998766522224567788433355599***8876.7888 PP

        NAM  94 skkgelvglkktLvfy...............kgrapkgektdWvmheyrl 128
                +  g+++g k+tL f+               +  +  g+ ++W+m ey l
  676737930 108 DLCGKTIGKKQTLKFHksnnnekkqkredgtSCASVPGSDSSWIMTEYML 157
                889*************66665543332222113344455999*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.7546178IPR003441NAC domain
SuperFamilySSF1019411.31E-238176IPR003441NAC domain
PfamPF023652.1E-139156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MEYNEEDGGV QFDPYDDELI QKCLIPKLRG KYSECKDSIV MKDVYEKEPW LLDHTRGSFF  60
KKNEWYYFTT RTQVSKKKNG CGRNSNRKIT GDNNGGSWKL NAKEDIKDLC GKTIGKKQTL  120
KFHKSNNNEK KQKREDGTSC ASVPGSDSSW IMTEYMLPDE EGKKYKFQEL ILCKIHVITK  180
SKKMDNNHEA STSYHHESIP ASSSKQQPIN INHQTTVQSP SLEQPILYGG SGPEIPHTGF  240
LRSLTCSAAE TDRNKEKRGE GNMVHYQTDA RSQEVLLRKI HERKKYKKND DHHEASNSSY  300
RPPHESFYSL KQPQINTGQS ILASSFFAEQ QQQQQINEAH RHAAEIPSIG SEKNDDQVIF  360
CKIQENNKSM KDYHHEASTY RHRNDFYTSE QQPMHVDYES VRASPWEQQP FTNYYDSFLA  420
SSSQQRPING AHGHDPEIPY IGSGENDQVF ETSRAPVLEQ QKVNDYDAFT ASLSSSFLGA  480
APFLKQTDND HDTFLPPLWE QQPMNFDYAS TMPSFFSEQQ PLNSFGHETF LPPLWEQQPI  540
NVYHESVVDT FPSEKQPITE HHRHAPEIPH VGSENNDQVF GTSRLSDDDT ATVKEIKGKE  600
KCENVVTEKD KQLHIGAPRV CLGPEQEAEE EKEREVDWLQ EFTNSLITLN GSGLPVEQDD  660
NILIYDTPFI DQDLLDQYAT LRPKESSHL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.22e-14NAC domain containing protein 35