PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676736652
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 508aa    MW: 55666.7 Da    PI: 9.5685
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676736652genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65.2e-1269113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
        676736652  69 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 113
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-1563119IPR009057Homeodomain-like
PROSITE profilePS5129413.75864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-667119IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-1867116IPR006447Myb domain, plants
SMARTSM007179.6E-1068116IPR001005SANT/Myb domain
PfamPF002491.2E-969113IPR001005SANT/Myb domain
CDDcd001673.12E-771114No hitNo description
PfamPF035011.9E-42329421IPR005326Plectin/S10, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MVSRNPNPAE GYFLDPNGMT VPGIGPFTAA VSSSPTTSST AVGVADATVS SSEDLSKKIR  60
KPYTITKSRE SWTEPEHDKF LEALQLFDRD WKKIEAFIGS KTVIQIRSHA QKYFLKVQKS  120
GTGEHLPPPR PKRKAAHPYP QKAHKNAQPQ VPASFKSTPE PNDSSYMFRP ESSSMLMTSP  180
TTPPAVAPWT NNVQTISFTP LPKGCCLFFN ILIEAAGAGA NNNCSSSSEN TPRPRANKDT  240
NEQGNLGQSL RVLPDFAQVY SFIGSVFDPH ASNHLQKLKK MDPIDVETVL LLMRNLSINL  300
SSPDFEDHRR LLSSYDIGSE TATDHGGIIS EENRREICKY LFKEGVCFAK KDFNLAKHPL  360
IESVPNLQVI KLMQSFKSKE YVRETFAWMH YYWFLTNEGI EFLRTYLNLP SDVVPATLKK  420
SAKPIGRPFG GPPGDRPRGP RFEGGDRPRY GDRDGYRGGP RAGGEFGGDK SGAPADYQPS  480
FQGSGGRPGF GRGAGGYGAA APSGSGLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_BK2e-70328484215940S ribosomal protein S10E
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676736652
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0652171e-175AY065217.1 Arabidopsis thaliana unknown protein (At5g52650) mRNA, complete cds.
GenBankAY1229321e-175AY122932.1 Arabidopsis thaliana unknown protein (At5g52650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401794.10.0protein REVEILLE 6 isoform X1
RefseqXP_024012565.10.0protein REVEILLE 6 isoform X2
SwissprotQ8H0W31e-177RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2P5FGQ10.0A0A2P5FGQ1_TREOI; GAMYB transcription factor
STRINGLus100388460.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-148MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]