PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676733176 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 381aa MW: 42231.2 Da PI: 6.4197 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.6 | 5.4e-14 | 168 | 214 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L 676733176 168 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 214 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.85 | 165 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-11 | 168 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-14 | 169 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-14 | 169 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-12 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.38E-5 | 178 | 217 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 8.6E-4 | 254 | 309 | No hit | No description |
CDD | cd04873 | 5.55E-6 | 254 | 323 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 381 aa Download sequence Send to blast |
MCAKKEEEVE SSGAMNNIQN YQNDLFFQQL ISHHHHHQDP SQSENFGAPS NNVGSGFTIF 60 SQDSVSPIWP TSVQPPFDQF PPPPSPASFY GSFFNRSRAH HQGLQFGYEG FGGAPSATHH 120 HHHEQLRILS EALGPVVQAG SGPFGLQAEL GKMTAQEIMD AKALAASKSH SEAERRRRER 180 INNHLAKLRS ILPNTTKTDK ASLLAEVIQH VKELKRETSV ISETNLVPTE SDELTVAFTE 240 EEETGDGRFV IKASLCCEDR SDLLPDMIKT LKAMRLKTLK AEITTVGGRV KNVLFVTGDE 300 SSGEEEMEEY CIGTIEEALK AVMEKSNVDE SSSSGSAKRQ RMSSHNTITI VEQQQHHRRV 360 RSGENKKRQV LDSGLCTLMP V |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 173 | 178 | ERRRRE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676733176 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY072161 | 0.0 | AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds. | |||
GenBank | AY122983 | 0.0 | AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391094.1 | 0.0 | transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 0.0 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | V4JST7 | 0.0 | V4JST7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006391094.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7048 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68810.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|