PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676724618
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 346aa    MW: 38421.2 Da    PI: 9.6664
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676724618genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.57.8e-104787545
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
               k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  676724618 47 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 87
               7889************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.6E-83790No hitNo description
SMARTSM003381.8E-643106IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384589IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.31E-74790No hitNo description
PfamPF001707.4E-74787IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141449.4E-34144219IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MADTSSRTDA STDGDTDPRD LGSERGQRML AVASDSSDRS KDKLDQKTLR RLAQNREAAR  60
KSRLRKKAYV QQLENSRLKL TQLEQELQRA RQQGVFISSS GDQAHSTGGN GLGWLGVGLG  120
FKASKWALAF DAEHSRWLEE KNKQMNELSS ALNAHAGDTE LRTIVDGVMA HYEELFRIKS  180
NAAKNDVFHL LSGMWKTPAE RCFLWLGGFR SSELLKLLAN QLEPMTERQV LGINSLQQTS  240
QQAEDALSQG MESLQQSLAD TLSSGTLGSS SSDNVASYMG QMAMAMGQLG TLEGFIRQAD  300
NLRLQTLQQM IRVLTTRQSA RALLAIHDYS SRLRALSSLW LARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676724618
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3205400.0AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene).
GenBankBT0295150.0BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731743.10.0transcription factor TGA6-like isoform X1
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLM4F1220.0M4F122_BRARP; Uncharacterized protein
STRINGBra034767.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-169TGACG motif-binding factor 6