PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676721356 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 248aa MW: 26342.3 Da PI: 5.558 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1e-05 | 134 | 155 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg+ F+++ H+r+H 676721356 134 VCNICGRAFRSWKAVFGHLRSH 155 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.19E-5 | 132 | 159 | No hit | No description |
PROSITE profile | PS50157 | 9.016 | 133 | 160 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 135 | 155 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MSNPEKMKVD DDNEEEREDS DEQWSDEELA MRNIVLALPA LRISNKNFGG SSAINEVEAR 60 LNEQAVAAAE LVIAAAEEAV MKDKSDGKKK KKVRRPRKTM KLNEEAGGSG NGGEGKNPKK 120 KSSELTNIPN GPPVCNICGR AFRSWKAVFG HLRSHKDRNY QGFLPPPKFS AKTGGVVIPG 180 PNSAFVPVVA GGGRSGGIVA AGGDGGGGGA PGGEVEDDNQ EVTESGTKAK FDLNKSPPKD 240 EEEEDKTK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676721356 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592252.1 | 1e-106 | PREDICTED: zinc finger protein ZAT9 | ||||
Refseq | XP_013649612.2 | 1e-106 | uncharacterized protein LOC106354258 | ||||
TrEMBL | A0A0D3A1Q6 | 1e-105 | A0A0D3A1Q6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ESB1 | 1e-105 | A0A3P6ESB1_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g006320.1 | 1e-105 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5875 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35610.1 | 2e-31 | C2H2 family protein |